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4
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ConsensusClusterPlus: How to extract most contributing features for each cluster
R consensusclusterplus
updated 24 months ago by 5.1k • written 4.5 years ago by ★ 4.1k
26
votes
35
replies
36k
views
16 follow
Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup
updated 2.6 years ago by ▴ 10 • written 11.5 years ago by ★ 4.1k
4
votes
7
replies
3.5k
views
TCGA library type information
tcga
updated 2.9 years ago by ★ 1.3k • written 4.3 years ago by ★ 4.1k
1
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1
reply
2.6k
views
Answer: Answer: Rshiny - ggplot - density plot
4.1 years ago by komal.rathi ★ 4.1k
3
votes
0
replies
5.1k
views
Answer: A: using hclust object from FactoMineR::HCPC to force clustering in pheatmap
5.2 years ago by komal.rathi ★ 4.1k
3
votes
3
replies
5.1k
views
using hclust object from FactoMineR::HCPC to force clustering in pheatmap
RNA-Seq factorminer PCA HCPC
5.2 years ago by komal.rathi ★ 4.1k
0
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0
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5.1k
views
Comment: C: using hclust object from FactoMineR::HCPC to force clustering in pheatmap
5.2 years ago by komal.rathi ★ 4.1k
1
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0
replies
3.5k
views
Comment: C: Are there publicly available metagenomic RNA-Seq datasets?
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 4.1k
1
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1
reply
8.7k
views
Comment: C: Genomic Features - makeTranscriptDbFromGFF()
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 4.1k
1
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2
replies
8.7k
views
Answer: A: Genomic Features - makeTranscriptDbFromGFF()
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 4.1k
0
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0
replies
8.7k
views
Comment: C: Genomic Features - makeTranscriptDbFromGFF()
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 4.1k
0
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2
replies
8.2k
views
Comment: C: FastQC and EstimateLibrarySize (Picard): Library Complexity and/or Duplicated Re
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 4.1k
0
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0
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12k
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Comment: C: Download all eQTL data for all the 9 tissues from GTEx Portal
updated 5.7 years ago by 45k • written 11.3 years ago by ★ 4.1k
0
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0
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7.9k
views
Comment: C: How does DESeq2 handle the read-counts assigned to special counters in HTSeq-cou
updated 5.7 years ago by 45k • written 11.4 years ago by ★ 4.1k
5
votes
0
replies
8.5k
views
Answer: Answer: how to retrieve the nucleotide/base in a certain position using any programming
updated 7 weeks ago by 45k • written 9.7 years ago by ★ 4.1k
0
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0
replies
7.6k
views
Comment: C: DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
updated 5.8 years ago by 45k • written 9.8 years ago by ★ 4.1k
0
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1
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7.6k
views
Comment: C: DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
updated 5.8 years ago by 45k • written 9.8 years ago by ★ 4.1k
1
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1
reply
3.2k
views
Answer: A: Gene lists from RNA Seq and Chip Seq
updated 5.8 years ago by 45k • written 11.0 years ago by ★ 4.1k
0
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0
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36k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.8 years ago by 45k • written 9.9 years ago by ★ 4.1k
0
votes
0
replies
11k
views
Comment: C: snakemake: pipeline failed with MissingOutputException
5.9 years ago by komal.rathi ★ 4.1k
43
votes
12
replies
42k
views
9 follow
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools
updated 3.9 years ago by 45k • written 12.4 years ago by ★ 4.1k
0
votes
0
replies
2.1k
views
Answer: A: How to create Gene_transcript association matrix with genome version hg19?
updated 5.9 years ago by 45k • written 10.8 years ago by ★ 4.1k
1
vote
1
reply
11k
views
Answer: Answer: Preparing a .genome file for snpEff
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 4.1k
0
votes
1
reply
13k
views
Comment: C: gtf file for htseq count
updated 5.9 years ago by 45k • written 10.8 years ago by ★ 4.1k
1
vote
0
replies
6.3k
views
Comment: C: 23andme: Convert Human Assembly Build 36 to Build 37
updated 5.9 years ago by 45k • written 10.8 years ago by ★ 4.1k
0
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1
reply
6.5k
views
Comment: C: HTSeq count (reverse count with paired-end data)
updated 5.9 years ago by 45k • written 11.2 years ago by ★ 4.1k
0
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0
replies
36k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 4.1k
0
votes
1
reply
36k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 4.1k
0
votes
0
replies
36k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 4.1k
0
votes
1
reply
36k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 4.1k
0
votes
0
replies
4.5k
views
Comment: C: Count The Number Of A, T, G And C At Specific Genomic Locations For Multiple Rna
updated 5.9 years ago by 45k • written 11.5 years ago by ★ 4.1k
4
votes
9
replies
12k
views
Download all eQTL data for all the 9 tissues from GTEx Portal
GTEx-Portal eQTL
updated 3.6 years ago by 45k • written 11.3 years ago by ★ 4.1k
0
votes
0
replies
12k
views
Comment: C: Download all eQTL data for all the 9 tissues from GTEx Portal
6.0 years ago by komal.rathi ★ 4.1k
5
votes
0
replies
5.1k
views
Answer: A: How to get known canonical transcript information from UCSC for a specific genco
6.3 years ago by komal.rathi ★ 4.1k
6
votes
3
replies
5.1k
views
How to get known canonical transcript information from UCSC for a specific gencode version
gencode ucsc canonical transcripts
6.3 years ago by komal.rathi ★ 4.1k
1
vote
0
replies
5.1k
views
Comment: C: How to get known canonical transcript information from UCSC for a specific genco
6.3 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
7.3k
views
Comment: C: GATK ASEReadCounter: Downstream analysis for identifying allele specific express
6.7 years ago by komal.rathi ★ 4.1k
6
votes
4
replies
7.3k
views
GATK ASEReadCounter: Downstream analysis for identifying allele specific expression
RNA-Seq allele-specific expression
updated 6.7 years ago by 6.6k • written 8.2 years ago by ★ 4.1k
0
votes
1
reply
4.8k
views
Comment: C: RSEM output interpretation
6.9 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
2.2k
views
Comment: C: How to determine RNA-seq samples from dbGaP metadata
7.1 years ago by komal.rathi ★ 4.1k
0
votes
3
replies
2.2k
views
How to determine RNA-seq samples from dbGaP metadata
dbgap metadata
updated 7.1 years ago by 5.8k • written 7.1 years ago by ★ 4.1k
6
votes
6
replies
4.9k
views
Rnaseq Library Quantification
rnaseq library
updated 7.5 years ago by 35k • written 11.9 years ago by ★ 4.1k
23
votes
8
replies
33k
views
R DESeq: What exactly is Variance Stabilizating Transformation?
R DESeq VST
updated 3.7 years ago by 45k • written 11.1 years ago by ★ 4.1k
0
votes
0
replies
2.9k
views
Comment: C: Why does GFF prepared using dexseq_prepare_annotation shows different exon numbe
8.0 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
5.1k
views
Comment: C: exon level quantification using htseq count
8.0 years ago by komal.rathi ★ 4.1k
8
votes
2
replies
2.9k
views
Why does GFF prepared using dexseq_prepare_annotation shows different exon number than UCSC genome browser
dexseq_prepare_annotation dexseq exons
updated 8.0 years ago by 105k • written 8.0 years ago by ★ 4.1k
0
votes
0
replies
2.6k
views
Comment: C: Filter bam files using a bed file: Why is the mate missing?
8.0 years ago by komal.rathi ★ 4.1k
1
vote
2
replies
2.6k
views
Filter bam files using a bed file: Why is the mate missing?
RNA-Seq Samtools
8.0 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
5.1k
views
Comment: C: exon level quantification using htseq count
8.0 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
5.1k
views
Comment: C: exon level quantification using htseq count
8.0 years ago by komal.rathi ★ 4.1k
413 results • Page 1 of 9
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