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5
votes
2
replies
2.7k
views
Calculating minor allele frequency for GnomAD VCF file
gnomAD genome
updated 4.3 years ago by ▴ 50 • written 4.9 years ago by ▴ 20
0
votes
0
replies
703
views
Finding mutational burden in TCGA dataset
genome python UTR tcga cancer
4.7 years ago by Jamie Watson ▴ 20
0
votes
0
replies
569
views
Converting VCF file to ms-style output
SNP genome sequence
4.7 years ago by Jamie Watson ▴ 20
0
votes
0
replies
930
views
Calling UTRs in TCGA dataset
TCGA cancer UTR ORF
4.7 years ago by Jamie Watson ▴ 20
0
votes
3
replies
878
views
Extracting positions that are upstream to start site positions
genome
4.8 years ago by Jamie Watson ▴ 20
0
votes
0
replies
1.8k
views
Comment: C: Downloading CADD scores
4.8 years ago by Jamie Watson ▴ 20
2
votes
3
replies
1.5k
views
difference in the content of a tsv and bigwig file
bigwig
4.8 years ago by Jamie Watson ▴ 20
3
votes
4
replies
1.8k
views
Downloading CADD scores
CADD SNP
updated 4.9 years ago by 166k • written 4.9 years ago by ▴ 20
2
votes
1
reply
1.6k
views
Lifting over from Hg37 to Hg38 coordinates doesn't work
liftover genome
updated 4.9 years ago by ▴ 180 • written 4.9 years ago by ▴ 20
0
votes
0
replies
649
views
Counting proportion of promoters with polymorphism in Gnomad dataset
genome
5.0 years ago by Jamie Watson ▴ 20
1
vote
1
reply
1.2k
views
Downloading promoter sequences from UCSC in bed format
genomics gene Assembly
updated 2.5 years ago by 45k • written 5.1 years ago by ▴ 20
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