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Questions about sample_accession_id and file_accession_id from EGA files
EGA open WGS data
updated 10 weeks ago by 153k • written 11 weeks ago by ▴ 20
3
votes
5
replies
2.4k
views
Problem in loading multiple BAM files in IGV
WGS IGV BAM
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 20
0
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0
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494
views
Variant calling from merged bam file with one vcf output
bam WGS variant calling
3.2 years ago by askif4 ▴ 20
1
vote
4
replies
1.7k
views
R ComplexHeatmap showing wrong output for for clustering columns
heatmap clustering R dendrogram
updated 3.7 years ago by 11k • written 3.7 years ago by ▴ 20
0
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1
reply
1.7k
views
Comment: Comment: R ComplexHeatmap showing wrong output for for clustering columns
3.7 years ago by askif4 ▴ 20
0
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1
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1.6k
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Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
4.1 years ago by askif4 ▴ 20
1
vote
3
replies
1.6k
views
How to compare alignments(SAM/BAM files) aligned to different references?
sam WGS NGS bam alignment
updated 4.1 years ago by ▴ 600 • written 4.1 years ago by ▴ 20
0
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0
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25k
views
Comment: Comment: GRCm39 (mm39) vs GRCm38(mm10)
4.4 years ago by askif4 ▴ 20
7
votes
2
replies
25k
views
GRCm39 (mm39) vs GRCm38(mm10)
genome reference mouse DNA dna
updated 4.4 years ago by 153k • written 4.4 years ago by ▴ 20
0
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0
replies
900
views
Is there any good chromosome recombination(crossover) analysis tools that are not old?
recombination Assembly gene sequencing
4.6 years ago by askif4 ▴ 20
0
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0
replies
1.3k
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Questions using "WhatsHap" tool for haplotype phasing
SNP haplotype phasing sequencing
4.7 years ago by askif4 ▴ 20
0
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0
replies
3.4k
views
Comment: C: How to check if a Fastq file is contaminated with other strains?
4.7 years ago by askif4 ▴ 20
0
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0
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3.4k
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Comment: C: How to check if a Fastq file is contaminated with other strains?
4.7 years ago by askif4 ▴ 20
0
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0
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3.4k
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Comment: C: How to check if a Fastq file is contaminated with other strains?
4.7 years ago by askif4 ▴ 20
0
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0
replies
3.4k
views
Comment: C: How to check if a Fastq file is contaminated with other strains?
4.7 years ago by askif4 ▴ 20
4
votes
9
replies
3.4k
views
6 follow
How to check if a Fastq file is contaminated with other strains?
gene next-gen sequencing assembly
updated 4.1 years ago by ▴ 80 • written 4.7 years ago by ▴ 20
0
votes
1
reply
1.8k
views
Comment: C: How to calculate VAF from BAM or SAM(+pileups) files using pysam?
4.7 years ago by askif4 ▴ 20
1
vote
3
replies
1.8k
views
How to calculate VAF from BAM or SAM(+pileups) files using pysam?
SNP sequencing bam VAF pysam
4.7 years ago by askif4 ▴ 20
0
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0
replies
1.0k
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How to determine specific strains(mouse) from BAM(or VCF) by unknown sample? (using or not using dbSNPs)
SNP VCF dbSNP mouse
4.7 years ago by askif4 ▴ 20
19 results • Page 1 of 1
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