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comments
3
votes
7
replies
4.3k
views
How to get input for provean from vcf files annotated by snpeff?
snpeff
vcf
provean
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
shl198
▴ 440
0
votes
1
reply
4.8k
views
Comment:
C: Why does trinity and cufflink use bowtie to align reads back to assembled reads?
updated 4.7 years ago by
Ram
44k • written 10.3 years ago by
shl198
▴ 440
8
votes
3
replies
19k
views
Answer:
A: Bwa Mem Have Different Alignment Result When Using Different Threads
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
shl198
▴ 440
47
votes
32
replies
19k
views
17 follow
Bwa Mem Have Different Alignment Result When Using Different Threads
updated 4 weeks ago by
Adily
• 0 • written 10.6 years ago by
shl198
▴ 440
15
votes
4
replies
21k
views
How does sliding window work in Trimmomatic
Trimmomatic
illumina
updated 3.0 years ago by
Ram
44k • written 10.4 years ago by
shl198
▴ 440
0
votes
0
replies
6.5k
views
Comment:
C: Augustus install mac
7.8 years ago by
shl198
▴ 440
4
votes
2
replies
2.4k
views
Is checking clustering of technical replicates necessary for RNAseq?
RNA-Seq
technical-replicates
updated 2.2 years ago by
Ram
44k • written 9.4 years ago by
shl198
▴ 440
5
votes
2
replies
2.4k
views
relationship between coverage and expression level in RNAseq
RNA-Seq
depth
expression
experiment design
updated 9.4 years ago by
Gary
▴ 480 • written 9.4 years ago by
shl198
▴ 440
0
votes
1
reply
4.3k
views
Comment:
C: How to get input for provean from vcf files annotated by snpeff?
9.7 years ago by
shl198
▴ 440
0
votes
1
reply
1.9k
views
detect SNPs using DNAseq fastq files which were used to assemble the genome
SNP
DNA-seq
Assembly
updated 2.7 years ago by
Ram
44k • written 10.0 years ago by
shl198
▴ 440
0
votes
1
reply
7.7k
views
Comment:
Comment: Why is pre formatted refseq database larger than nt database in blastdb?
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
shl198
▴ 440
17
votes
4
replies
7.7k
views
Why is pre formatted refseq database larger than nt database in blastdb?
blast
refseq
nt
updated 2.8 years ago by
Ram
44k • written 10.2 years ago by
shl198
▴ 440
0
votes
0
replies
3.4k
views
Comment:
Comment: Bowtie2 treats reads as not mapping even if the reads have exact same sequences
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
shl198
▴ 440
0
votes
1
reply
3.4k
views
Comment:
C: Bowtie2 treats reads as not mapping even if the reads have exact same sequences
10.1 years ago by
shl198
▴ 440
5
votes
4
replies
3.4k
views
Bowtie2 treats reads as not mapping even if the reads have exact same sequences with reference?
bowtie2
quality
tophat
RNA-Seq
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
shl198
▴ 440
0
votes
0
replies
9.1k
views
Comment:
C: Can bowtie2-build index for gzipped file?
10.2 years ago by
shl198
▴ 440
1
vote
1
reply
9.1k
views
Comment:
Comment: Can bowtie2-build index for gzipped file?
updated 2.8 years ago by
Ram
44k • written 10.2 years ago by
shl198
▴ 440
4
votes
5
replies
9.1k
views
Can bowtie2-build index for gzipped file?
bowtie2
bowtie2-build
gzip
gunzip
updated 2.8 years ago by
Ram
44k • written 10.2 years ago by
shl198
▴ 440
1
vote
4
replies
4.2k
views
How To Get Genome Name And Genome Type With Gi Number And Accession Number In Python?
biopython
updated 10.2 years ago by
Biostar
20 • written 10.6 years ago by
shl198
▴ 440
1
vote
3
replies
4.8k
views
Why does trinity and cufflink use bowtie to align reads back to assembled reads?
RNA-Seq
trinity
cufflink
bowtie
10.3 years ago by
shl198
▴ 440
24
votes
2
replies
13k
views
Run Makeblastdb For Compressed File
blast+
makeblastdb
updated 10.4 years ago by
Neilfws
49k • written 10.4 years ago by
shl198
▴ 440
3
votes
1
reply
4.4k
views
Align Paired End Reads Using Blast
blast
paired-end
ngs
updated 10.4 years ago by
Istvan Albert
101k • written 10.4 years ago by
shl198
▴ 440
0
votes
1
reply
19k
views
Comment:
C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.6 years ago by
shl198
▴ 440
3
votes
1
reply
4.4k
views
Can Igv View Blast+ Output File?
blast+
igv
ngs
updated 10.6 years ago by
Istvan Albert
101k • written 10.6 years ago by
shl198
▴ 440
0
votes
0
replies
19k
views
Comment:
C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.6 years ago by
shl198
▴ 440
0
votes
0
replies
19k
views
Comment:
C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.6 years ago by
shl198
▴ 440
2
votes
1
reply
19k
views
Comment:
C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.6 years ago by
shl198
▴ 440
0
votes
0
replies
6.5k
views
Comment:
C: The Reference Genome Of The Reading In Bam File
10.8 years ago by
shl198
▴ 440
0
votes
1
reply
6.5k
views
Comment:
C: The Reference Genome Of The Reading In Bam File
10.8 years ago by
shl198
▴ 440
2
votes
4
replies
6.5k
views
The Reference Genome Of The Reading In Bam File
r
bam
alignment
updated 10.8 years ago by
Ashutosh Pandey
12k • written 10.8 years ago by
shl198
▴ 440
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