Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
3.8k
views
Comment: Comment: Where does BioPython store information related to various chemical molecules?
2.9 years ago by user366312 ▴ 20
0
votes
1
reply
3.8k
views
Comment: Comment: Where does BioPython store information related to various chemical molecules?
2.9 years ago by user366312 ▴ 20
0
votes
0
replies
3.8k
views
Comment: Comment: Where does BioPython store information related to various chemical molecules?
2.9 years ago by user366312 ▴ 20
0
votes
15
replies
3.8k
views
6 follow
Where does BioPython store information related to various chemical molecules?
protein pdb python biopython
updated 2.9 years ago by 45k • written 2.9 years ago by ▴ 20
0
votes
1
reply
3.8k
views
Comment: Comment: Where does BioPython store information related to various chemical molecules?
2.9 years ago by user366312 ▴ 20
0
votes
1
reply
3.8k
views
Comment: Comment: Where does BioPython store information related to various chemical molecules?
2.9 years ago by user366312 ▴ 20
0
votes
1
reply
3.8k
views
Comment: Comment: Where does BioPython store information related to various chemical molecules?
2.9 years ago by user366312 ▴ 20
2
votes
1
reply
806
views
Can the information regarding atomic bonds be interpreted only from atom lines in a PDB file?
protein bond amino-acid residue
updated 3.0 years ago by ▴ 380 • written 3.0 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Comment: Comment: What are some tools capable of generating main chain from C-alpha trace only?
3.0 years ago by user366312 ▴ 20
0
votes
3
replies
1.2k
views
What are some tools capable of generating main chain from C-alpha trace only?
protein alpha-carbon pdb
updated 3.0 years ago by ★ 30k • written 3.0 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Comment: Comment: How can I clean a PDB file using VMD or NAMD?
3.0 years ago by user366312 ▴ 20
0
votes
3
replies
1.6k
views
How can I clean a PDB file using VMD or NAMD?
protein namd pdb vmd
updated 3.0 years ago by ★ 30k • written 3.0 years ago by ▴ 20
0
votes
0
replies
537
views
How can I compute the performance of an application software?
protein alpha-carbon pdb protein-reconstruction
3.0 years ago by user366312 ▴ 20
0
votes
1
reply
3.7k
views
Comment: Comment: how can I compare two PDB files?
3.0 years ago by user366312 ▴ 20
1
vote
5
replies
3.7k
views
how can I compare two PDB files?
protein alpha-carbon pdb
updated 3.0 years ago by ★ 2.1k • written 3.0 years ago by ▴ 20
1
vote
7
replies
2.1k
views
What would the items look like if we put them on a length scale?
length-scale scale time-scale biological-process offtopic
updated 3.3 years ago by ★ 30k • written 3.3 years ago by ▴ 20
0
votes
1
reply
875
views
What does it mean by "dynamics"?
dynamics protein-dynamics protein
updated 3.3 years ago by ★ 2.9k • written 3.3 years ago by ▴ 20
3
votes
2
replies
1.2k
views
Which one is the smallest but the most complex PDB file?
pdb protein
updated 3.4 years ago by ★ 2.1k • written 3.4 years ago by ▴ 20
2
votes
1
reply
727
views
Which atoms are not found in protein PDB files?
pdb protein
updated 3.4 years ago by ★ 2.1k • written 3.4 years ago by ▴ 20
0
votes
1
reply
916
views
How can I parse alternative atom information in a PDB file?
pdb protein
updated 3.4 years ago by ★ 2.1k • written 3.4 years ago by ▴ 20
0
votes
0
replies
636
views
What does it mean by a "site" in the case of a CG model?
coarse-grained modeling simulation
3.4 years ago by user366312 ▴ 20
0
votes
0
replies
642
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 2.9 years ago by 45k • written 3.4 years ago by ▴ 20
1
vote
0
replies
1.0k
views
Comment: Comment: What do they mean by "multidomain" and "multimetric"?
3.5 years ago by user366312 ▴ 20
3
votes
2
replies
1.0k
views
What do they mean by "multidomain" and "multimetric"?
protein protein-structure protein-structure-prediction
3.5 years ago by user366312 ▴ 20
4
votes
1
reply
1.2k
views
What does it mean by "topology" in the case of secondary and tertiary structures of proteins?
protein protein-structure protein-structure-prediction
updated 3.5 years ago by ★ 30k • written 3.5 years ago by ▴ 20
0
votes
0
replies
628
views
Open issues in protein simulation in MC?
protein protein-structure protein-structure-prediction
3.5 years ago by user366312 ▴ 20
0
votes
0
replies
601
views
What does it mean by pruning and enrichment in the case of Rosenbluth method?
polymer simulation monte-carlo rosenbluth
3.5 years ago by user366312 ▴ 20
0
votes
0
replies
581
views
Polymer simulation
polymer simulation bead-spring-model monte-carlo
3.5 years ago by user366312 ▴ 20
0
votes
0
replies
397
views
Can you recommend a book on molecular modeling that supplies programming examples?
molecular-modeling
3.6 years ago by user366312 ▴ 20
2
votes
1
reply
1.0k
views
What does it mean by "conformational space"?
protein-structure-prediction protein-structure protein
updated 3.6 years ago by ★ 1.7k • written 3.6 years ago by ▴ 20
3
votes
2
replies
1.1k
views
What does it mean by local structure?
protein-structure proteins
updated 3.6 years ago by ★ 30k • written 3.6 years ago by ▴ 20
0
votes
0
replies
586
views
What is coarse-grained modeling of proteins?
simulation protein modeling
3.6 years ago by user366312 ▴ 20
0
votes
0
replies
524
views
How to represent a summary of disagreement between two secondary structure predictors given predictions for many proteins?
protein-structure-prediction secondary-structure protein-structure protein
3.7 years ago by user366312 ▴ 20
0
votes
1
reply
6.8k
views
Comment: Comment: How can I list all amino acids in a protein using PyMOL?
3.7 years ago by user366312 ▴ 20
0
votes
1
reply
6.8k
views
Comment: Comment: How can I list all amino acids in a protein using PyMOL?
3.7 years ago by user366312 ▴ 20
1
vote
6
replies
6.8k
views
How can I list all amino acids in a protein using PyMOL?
pdb pymol
updated 3.7 years ago by ★ 2.1k • written 3.7 years ago by ▴ 20
0
votes
0
replies
1.5k
views
Comment: Comment: Secondary structure assignment tool.
3.7 years ago by user366312 ▴ 20
0
votes
1
reply
1.5k
views
Comment: Comment: Secondary structure assignment tool.
3.7 years ago by user366312 ▴ 20
2
votes
4
replies
1.5k
views
Secondary structure assignment tool.
secondary-structure protein assignment
3.7 years ago by user366312 ▴ 20
0
votes
1
reply
1.5k
views
Comment: Comment: Can I traverse/enumerate PDB one at a time using a Python script without downloa
4.0 years ago by user366312 ▴ 20
1
vote
3
replies
1.5k
views
Can I traverse/enumerate PDB one at a time using a Python script without downloading all of them to my local disk?
python pdb-file proteins
updated 4.0 years ago by 22k • written 4.0 years ago by ▴ 20
0
votes
0
replies
706
views
How can I programmatically add a Hydrogen 'Atom' to a 'Residue' object?
proteins hydrogen pdb python
4.0 years ago by user366312 ▴ 20
0
votes
1
reply
926
views
How can I get a list of neighboring Hydrogen atoms of an alpha-carbon?
python biopython protein
updated 4.0 years ago by ★ 30k • written 4.0 years ago by ▴ 20
0
votes
0
replies
981
views
How can I calculate the distance between a C-alpha atom and its hydrogen bond in a protein?
python hydrogen-bonds pdb-file proteins
4.0 years ago by user366312 ▴ 20
0
votes
0
replies
2.2k
views
Comment: Comment: How can I calculate hydrogen bonds in a specific direction w.r.t. a C-alpha atom
4.0 years ago by user366312 ▴ 20
0
votes
1
reply
2.2k
views
Comment: Comment: How can I calculate hydrogen bonds in a specific direction w.r.t. a C-alpha atom
4.0 years ago by user366312 ▴ 20
0
votes
4
replies
2.2k
views
How can I calculate hydrogen bonds in a specific direction w.r.t. a C-alpha atom in a protein?
python hydrogen-bonds pdb-file proteins
4.0 years ago by user366312 ▴ 20
4
votes
4
replies
1.4k
views
What is the difference between Assignment and Prediction?
protein protein-structure protein-structure-prediction
updated 4.3 years ago by ★ 30k • written 4.3 years ago by ▴ 20
0
votes
1
reply
1.4k
views
Comment: Comment: What is the difference between Assignment and Prediction?
4.3 years ago by user366312 ▴ 20
49 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6