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2
votes
4
replies
1.3k
views
Converting samtools view <region> output (multiple reads) into single fasta sequence (consensus?)
coordinate dna samtools view consensus
3.0 years ago by a1ultima ▴ 840
3
votes
4
replies
2.3k
views
Number Of Species Is Restricted By Genome Combinatorics?
genome
updated 4.8 years ago by 20 • written 10.3 years ago by ▴ 840
3
votes
8
replies
3.5k
views
List Species Names In Local Mysql Ensembl Database Via Pycogent?
ensembl database python mysql
updated 8.0 years ago by • 0 • written 10.3 years ago by ▴ 840
0
votes
0
replies
1.3k
views
Which ligands bind (are sensed by) these Odorant Binding Proteins?
odorant ligand protein
updated 20 months ago by 43k • written 8.4 years ago by ▴ 840
2
votes
2
replies
2.8k
views
Estimate gene flow between two populations?
population-genetics genetics gene-flow fst
updated 19 months ago by 43k • written 8.7 years ago by ▴ 840
1
vote
2
replies
2.7k
views
Where can I download JASPAR_CORE_2014.meme or similar?
transcriptionfactor database meme dna-motif
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 840
13
votes
6
replies
4.7k
views
Bio.Phylo.Paml.Codeml'S Results Parser Quietly Fails To Read All The Data
biopython python codeml parser read
updated 9.8 years ago by 20 • written 10.3 years ago by ▴ 840
3
votes
2
replies
4.1k
views
Hierarchical tree based on phylogenetic profile matrix (presence/absence per species)?
Phylogenetic-profile Python Biopython R Tree
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 840
12
votes
10
replies
9.7k
views
Shannon entropy of a DNA motif?
entropy dna motif position-weight-matrix sequence
10.0 years ago by a1ultima ▴ 840
0
votes
0
replies
1.7k
views
Pycogent:Loadtree: Transform Tree Branch Lengths In Place?
tree
updated 10.0 years ago by 20 • written 10.1 years ago by ▴ 840
5
votes
2
replies
2.8k
views
Which cut-off for collapsing this tree?
homology distance collapse Newick orthology
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 840
21
votes
9
replies
7.3k
views
Collapse Clades In A Newick Tree With Average Distance To Tips < X
tree distance phylogeny
updated 2.4 years ago by 43k • written 10.1 years ago by ▴ 840
5
votes
4
replies
4.3k
views
How Can I Re-Format My Dna Motifs' Position Weight Matrices (Pwms)?
dna motif matrix
10.1 years ago by a1ultima ▴ 840
3
votes
2
replies
4.0k
views
How Do I Generate A -Bfile For Meme?
meme motif dna
updated 10.2 years ago by ▴ 430 • written 10.2 years ago by ▴ 840
2
votes
3
replies
2.4k
views
Cogent.Db.Ensembl Cookbook Example Returns 'Programmingerror', New Bug?
ensembl database
10.3 years ago by a1ultima ▴ 840
4
votes
4
replies
2.8k
views
Predicting Host-Pathogen Gene Interaction Networks
genomics interaction network
updated 10.3 years ago by 26k • written 10.3 years ago by ▴ 840
8
votes
7
replies
3.4k
views
How Easy Is It To Carry Out De Novo Sequence Assembly?
general genome sequencing
updated 10.3 years ago by 8.2k • written 10.3 years ago by ▴ 840
1
vote
3
replies
7.4k
views
Sliding Window Ka/Ks (Dn/Ds) Analysis Via Python?
evolution protein
10.3 years ago by a1ultima ▴ 840
6
votes
7
replies
6.8k
views
Codon Alignment Via Python?
biopython python alignment codon
10.3 years ago by a1ultima ▴ 840
5
votes
10
replies
5.9k
views
Alignio Gives 'Assertionerror' When Reading Emboss Alignment Files
alignment biopython fasta
updated 10.4 years ago by 6.0k • written 10.4 years ago by ▴ 840
0
votes
0
replies
1.7k
views
Emboss Needle() Warning: “Sequence Character Not Found In Ajseqcvtks” …?
10.4 years ago by a1ultima ▴ 840
21 results • Page 1 of 1
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