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Answer: A: RNA-Seq of environmental samples
9.5 years ago by Biogeek ▴ 480
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2
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2.8k
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Comment: C: RNA-Seq of environmental samples
9.5 years ago by Biogeek ▴ 480
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1
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7.0k
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Answer: A: Bowtie memory warning
9.6 years ago by Biogeek ▴ 480
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1
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2.8k
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Comment: C: RNA-Seq of environmental samples
9.6 years ago by Biogeek ▴ 480
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2.0k
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Answer: A: Simple question: obtaining GO terminology utilizing NCBI GI's
9.6 years ago by Biogeek ▴ 480
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2
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2.0k
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Simple question: obtaining GO terminology utilizing NCBI GI's
ncbi annotation GO
9.6 years ago by Biogeek ▴ 480
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0
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4.5k
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Comment: C: EdgeR filter thresholds
9.6 years ago by Biogeek ▴ 480
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2
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4.5k
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EdgeR filter thresholds
edger DIFFERENTIAL EXPRESSION
updated 9.6 years ago by 12k • written 9.6 years ago by ▴ 480
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1
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5.0k
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Comment: C: Visualize groups of conditions bys MDS.
9.6 years ago by Biogeek ▴ 480
2
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1
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5.0k
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Answer: A: Visualize groups of conditions bys MDS.
9.6 years ago by Biogeek ▴ 480
1
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0
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1.7k
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High BCV in differential expression, thoughts?
differential expression
9.6 years ago by Biogeek ▴ 480
5
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4
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4.8k
views
Filtering by FPKM, opinions and thoughts
fpkm filtering
updated 9.6 years ago by 9.0k • written 9.6 years ago by ▴ 480
0
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1
reply
2.7k
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curating a viridiplantae database
blast sequences annotation
updated 9.6 years ago by ▴ 30 • written 9.6 years ago by ▴ 480
1
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1
reply
2.5k
views
Annotation: From GO to IPS
Interproscan gene ontology
updated 9.7 years ago by ★ 2.3k • written 9.7 years ago by ▴ 480
0
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1
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1.8k
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How to get blastx top hit (e-score)
blastx besthit
updated 9.7 years ago by 7.3k • written 9.7 years ago by ▴ 480
0
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0
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1.4k
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RAPSEARCH extracting best hit, how to do it?
rapsearch similarity
9.7 years ago by Biogeek ▴ 480
0
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1
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2.2k
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Comment: C: edgeR: is calcnormfactors necessary for complex GLM approach?
9.7 years ago by Biogeek ▴ 480
2
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3
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2.2k
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edgeR: is calcnormfactors necessary for complex GLM approach?
edgeR normalization
updated 9.7 years ago by 105k • written 9.7 years ago by ▴ 480
0
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1
reply
2.3k
views
Annotating the transcripts of a de novo plant transcriptome
plant-transcriptome blastx standalone annotation
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 480
1
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0
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3.1k
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Answer: Answer: denovo analysis of rna seq data
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 480
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1
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3.5k
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Comment: C: Going from BlastX to GO annotation
9.7 years ago by Biogeek ▴ 480
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1
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3.5k
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Comment: C: Low number of differentially expressed genes
9.8 years ago by Biogeek ▴ 480
0
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3
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3.5k
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Low number of differentially expressed genes
RNA-Seq differential-expression edgeR
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 480
1
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3
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3.1k
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Stand alone Blast annotation with multiple databases
annotation blast
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 480
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0
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4.0k
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Comment: C: Differential expression analysis on Trinity tool
9.8 years ago by Biogeek ▴ 480
1
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7
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12k
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Paired End Trimmomatic producing asymmetric paired read files.
RNA-Seq qc trimmomatic
updated 3.3 years ago by 45k • written 9.9 years ago by ▴ 480
5
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11
replies
22k
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MDS plots with R
RNA-Seq MDS-plots Statistics
updated 4.1 years ago by 45k • written 11.4 years ago by ▴ 480
0
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0
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22k
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Comment: A: MDS plots with R
11.4 years ago by Biogeek ▴ 480
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1
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22k
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Comment: A: MDS plots with R
11.4 years ago by Biogeek ▴ 480
1
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6
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7.5k
views
normalized FPKM matrix file EdgeR and GO Mapping
FPKM RNA-Seq differential-exp GOmapping
updated 4.1 years ago by 45k • written 11.5 years ago by ▴ 480
0
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1
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7.5k
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Comment: C: normalized FPKM matrix file EdgeR and GO Mapping
11.5 years ago by Biogeek ▴ 480
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0
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7.5k
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Comment: A: normalized FPKM matrix file EdgeR and GO Mapping
11.5 years ago by Biogeek ▴ 480
4
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4
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12k
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FPKM values / Data analysis
Analysis RNA-Seq FPKM transcriptomics
updated 4.1 years ago by 45k • written 11.5 years ago by ▴ 480
0
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0
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2.1k
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Weird Outputs With Dynamictrim And Lengthsort On Custom Settings
qc
11.7 years ago by Biogeek ▴ 480
4
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3
replies
3.0k
views
Is There Such A Way/ Program To Do This...
fasta blast rna-seq
updated 11.7 years ago by ★ 4.8k • written 11.7 years ago by ▴ 480
3
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2
replies
6.3k
views
Trinity/Rsem/Edger Pipeline...Now What?
trinity blast analysis
updated 11.7 years ago by 8.3k • written 11.7 years ago by ▴ 480
0
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1
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2.4k
views
Error With Trinity + Alignreader.Pl
trinity unix
updated 2.7 years ago by 45k • written 11.9 years ago by ▴ 480
187 results • Page 4 of 4
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