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Comment: Comment: How to convert a for loop to a Job-array in LSF cluster
3.1 years ago by LDT ▴ 340
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1
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19k
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Comment: Comment: How to update rlang in R?
3.1 years ago by LDT ▴ 340
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1
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19k
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Comment: Comment: How to update rlang in R?
3.1 years ago by LDT ▴ 340
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0
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905
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Comment: Comment: Can you use kallisto to process GRO-seq data?
3.2 years ago by LDT ▴ 340
1
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2
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905
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Can you use kallisto to process GRO-seq data?
pNet-seq GRO-seq kallisto
3.2 years ago by LDT ▴ 340
7
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9
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3.9k
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Is it possible to run MultiQC on different batches of files?
fastQC multiQC
updated 2.1 years ago by ▴ 10 • written 3.2 years ago by ▴ 340
3
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1
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1.0k
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Change ReadGroup name with BWA mem in a group of paired-end files
bam bwa bwa-mem
updated 3.2 years ago by 103k • written 3.2 years ago by ▴ 340
4
votes
2
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986
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How to normalise counts to compare RNAseq results between two spcecies
DESeq2 RNAseq normalisation
updated 2.8 years ago by ▴ 40 • written 3.2 years ago by ▴ 340
0
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1
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643
views
Do you need to sort bam files that you have intersected before with bedtools
bedtools bam
updated 2.4 years ago by 45k • written 3.2 years ago by ▴ 340
2
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1
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1.8k
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Answer: Answer: What is this visual/graph called? I am trying to achieve this using R.
3.2 years ago by LDT ▴ 340
1
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0
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601
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Correlation Plot of Two Biological Replicates of GRO-seq Data
groHMM GRO-seq HOMER
3.3 years ago by LDT ▴ 340
2
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0
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7.1k
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Answer: Answer: Transform a data.frame to GRranges in R
3.3 years ago by LDT ▴ 340
0
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0
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7.1k
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Comment: Comment: Transform a data.frame to GRranges in R
3.3 years ago by LDT ▴ 340
0
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2
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7.1k
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Comment: Comment: Transform a data.frame to GRranges in R
3.3 years ago by LDT ▴ 340
2
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1
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3.7k
views
Convert an R data.frame to a bed file in R
bam bed bedtools R rtracklayer
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 340
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0
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15k
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Comment: Comment: How to remove reads associated with a specific region from bam file?
3.3 years ago by LDT ▴ 340
0
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0
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2.7k
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Comment: Comment: Error in converting the column name into the rowname in R dataframe
3.3 years ago by LDT ▴ 340
0
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1
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2.7k
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Comment: Comment: Error in converting the column name into the rowname in R dataframe
3.3 years ago by LDT ▴ 340
0
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2
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2.7k
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Answer: Answer: Error in converting the column name into the rowname in R dataframe
3.3 years ago by LDT ▴ 340
0
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1
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1.4k
views
Comment: Comment: How to remove Illumina Small RNA 3' Adapter?
3.3 years ago by LDT ▴ 340
4
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3
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1.4k
views
How to remove Illumina Small RNA 3' Adapter?
cutadapt trimm trimmomatic
updated 3.3 years ago by 154k • written 3.3 years ago by ▴ 340
0
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1
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1.9k
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Comment: Comment: How to remove polyAAA tails with Trimmomatic
3.3 years ago by LDT ▴ 340
1
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3
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1.9k
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How to remove polyAAA tails with Trimmomatic
polyAAA trimming trimmomatic
updated 3.3 years ago by 154k • written 3.3 years ago by ▴ 340
1
vote
1
reply
749
views
blastn a query to a masked subject
refrence masked reference align blastn
updated 3.7 years ago by 16k • written 3.7 years ago by ▴ 340
9
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6
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3.5k
views
Extract from a .bam file the reads that map to specific area in the reference genome
alignment sequences bam extract
updated 3.3 years ago by ★ 2.7k • written 3.8 years ago by ▴ 340
5
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1
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3.5k
views
Answer: Answer: Extract from a .bam file the reads that map to specific area in the reference ge
3.7 years ago by LDT ▴ 340
3
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6
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2.1k
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How can I extract part of the DNA sequences that align to a specific region in the reference from a .bam file?
bedtools alignment samtools bam sequences
3.7 years ago by LDT ▴ 340
2
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0
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2.1k
views
Answer: Answer: How can I extract part of the DNA sequences that align to a specific region in t
3.7 years ago by LDT ▴ 340
0
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0
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2.1k
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Comment: Comment: How can I extract part of the DNA sequences that align to a specific region in t
3.8 years ago by LDT ▴ 340
0
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1
reply
2.1k
views
Comment: Comment: How can I extract part of the DNA sequences that align to a specific region in t
3.8 years ago by LDT ▴ 340
0
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0
replies
3.5k
views
Comment: Comment: Extract from a .bam file the reads that map to specific area in the reference ge
3.8 years ago by LDT ▴ 340
1
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1
reply
1.0k
views
How to map amplicon sequences to a reference with masked sequences?
reference amplicon bwa bowtie2 alignment
updated 2.6 years ago by ▴ 30 • written 3.9 years ago by ▴ 340
4
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2
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2.0k
views
Extract strings based on multiple patterns in R
DNA strings Biostrings r Levenhstein
updated 3.9 years ago by 21k • written 3.9 years ago by ▴ 340
0
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1
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21k
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Comment: Comment: Splitting A Fasta File
4.3 years ago by LDT ▴ 340
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