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2.7k
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Comment:
Comment: How to convert a for loop to a Job-array in LSF cluster
3.1 years ago by
LDT
▴ 340
0
votes
1
reply
19k
views
Comment:
Comment: How to update rlang in R?
3.1 years ago by
LDT
▴ 340
0
votes
1
reply
19k
views
Comment:
Comment: How to update rlang in R?
3.1 years ago by
LDT
▴ 340
0
votes
0
replies
905
views
Comment:
Comment: Can you use kallisto to process GRO-seq data?
3.2 years ago by
LDT
▴ 340
1
vote
2
replies
905
views
Can you use kallisto to process GRO-seq data?
pNet-seq
GRO-seq
kallisto
3.2 years ago by
LDT
▴ 340
7
votes
9
replies
3.9k
views
Is it possible to run MultiQC on different batches of files?
fastQC
multiQC
updated 2.1 years ago by
Oliver
▴ 10 • written 3.2 years ago by
LDT
▴ 340
3
votes
1
reply
1.0k
views
Change ReadGroup name with BWA mem in a group of paired-end files
bam
bwa
bwa-mem
updated 3.2 years ago by
Istvan Albert
103k • written 3.2 years ago by
LDT
▴ 340
4
votes
2
replies
986
views
How to normalise counts to compare RNAseq results between two spcecies
DESeq2
RNAseq
normalisation
updated 2.8 years ago by
Lada
▴ 40 • written 3.2 years ago by
LDT
▴ 340
0
votes
1
reply
643
views
Do you need to sort bam files that you have intersected before with bedtools
bedtools
bam
updated 2.4 years ago by
Ram
45k • written 3.2 years ago by
LDT
▴ 340
2
votes
1
reply
1.8k
views
Answer:
Answer: What is this visual/graph called? I am trying to achieve this using R.
3.2 years ago by
LDT
▴ 340
1
vote
0
replies
601
views
Correlation Plot of Two Biological Replicates of GRO-seq Data
groHMM
GRO-seq
HOMER
3.3 years ago by
LDT
▴ 340
2
votes
0
replies
7.1k
views
Answer:
Answer: Transform a data.frame to GRranges in R
3.3 years ago by
LDT
▴ 340
0
votes
0
replies
7.1k
views
Comment:
Comment: Transform a data.frame to GRranges in R
3.3 years ago by
LDT
▴ 340
0
votes
2
replies
7.1k
views
Comment:
Comment: Transform a data.frame to GRranges in R
3.3 years ago by
LDT
▴ 340
2
votes
1
reply
3.7k
views
Convert an R data.frame to a bed file in R
bam
bed
bedtools
R
rtracklayer
updated 3.3 years ago by
rpolicastro
13k • written 3.3 years ago by
LDT
▴ 340
0
votes
0
replies
15k
views
Comment:
Comment: How to remove reads associated with a specific region from bam file?
3.3 years ago by
LDT
▴ 340
0
votes
0
replies
2.7k
views
Comment:
Comment: Error in converting the column name into the rowname in R dataframe
3.3 years ago by
LDT
▴ 340
0
votes
1
reply
2.7k
views
Comment:
Comment: Error in converting the column name into the rowname in R dataframe
3.3 years ago by
LDT
▴ 340
0
votes
2
replies
2.7k
views
Answer:
Answer: Error in converting the column name into the rowname in R dataframe
3.3 years ago by
LDT
▴ 340
0
votes
1
reply
1.4k
views
Comment:
Comment: How to remove Illumina Small RNA 3' Adapter?
3.3 years ago by
LDT
▴ 340
4
votes
3
replies
1.4k
views
How to remove Illumina Small RNA 3' Adapter?
cutadapt
trimm
trimmomatic
updated 3.3 years ago by
GenoMax
154k • written 3.3 years ago by
LDT
▴ 340
0
votes
1
reply
1.9k
views
Comment:
Comment: How to remove polyAAA tails with Trimmomatic
3.3 years ago by
LDT
▴ 340
1
vote
3
replies
1.9k
views
How to remove polyAAA tails with Trimmomatic
polyAAA
trimming
trimmomatic
updated 3.3 years ago by
GenoMax
154k • written 3.3 years ago by
LDT
▴ 340
1
vote
1
reply
749
views
blastn a query to a masked subject
refrence
masked
reference
align
blastn
updated 3.7 years ago by
lieven.sterck
16k • written 3.7 years ago by
LDT
▴ 340
9
votes
6
replies
3.5k
views
Extract from a .bam file the reads that map to specific area in the reference genome
alignment
sequences
bam
extract
updated 3.3 years ago by
Prakki Rama
★ 2.7k • written 3.8 years ago by
LDT
▴ 340
5
votes
1
reply
3.5k
views
Answer:
Answer: Extract from a .bam file the reads that map to specific area in the reference ge
3.7 years ago by
LDT
▴ 340
3
votes
6
replies
2.1k
views
How can I extract part of the DNA sequences that align to a specific region in the reference from a .bam file?
bedtools
alignment
samtools
bam
sequences
3.7 years ago by
LDT
▴ 340
2
votes
0
replies
2.1k
views
Answer:
Answer: How can I extract part of the DNA sequences that align to a specific region in t
3.7 years ago by
LDT
▴ 340
0
votes
0
replies
2.1k
views
Comment:
Comment: How can I extract part of the DNA sequences that align to a specific region in t
3.8 years ago by
LDT
▴ 340
0
votes
1
reply
2.1k
views
Comment:
Comment: How can I extract part of the DNA sequences that align to a specific region in t
3.8 years ago by
LDT
▴ 340
0
votes
0
replies
3.5k
views
Comment:
Comment: Extract from a .bam file the reads that map to specific area in the reference ge
3.8 years ago by
LDT
▴ 340
1
vote
1
reply
1.0k
views
How to map amplicon sequences to a reference with masked sequences?
reference
amplicon
bwa
bowtie2
alignment
updated 2.6 years ago by
corrector
▴ 30 • written 3.9 years ago by
LDT
▴ 340
4
votes
2
replies
2.0k
views
Extract strings based on multiple patterns in R
DNA
strings
Biostrings
r
Levenhstein
updated 3.9 years ago by
cpad0112
21k • written 3.9 years ago by
LDT
▴ 340
0
votes
1
reply
21k
views
Comment:
Comment: Splitting A Fasta File
4.3 years ago by
LDT
▴ 340
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