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Comment: Comment: How to update rlang in R?
19 months ago by LDT ▴ 340
0
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0
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572
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Comment: Comment: Can you use kallisto to process GRO-seq data?
20 months ago by LDT ▴ 340
1
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2
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572
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Can you use kallisto to process GRO-seq data?
pNet-seq GRO-seq kallisto
20 months ago by LDT ▴ 340
7
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9
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1.8k
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Is it possible to run MultiQC on different batches of files?
fastQC multiQC
updated 7 months ago by ▴ 10 • written 20 months ago by ▴ 340
3
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1
reply
523
views
Change ReadGroup name with BWA mem in a group of paired-end files
bam bwa bwa-mem
updated 20 months ago by 100k • written 20 months ago by ▴ 340
4
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2
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535
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How to normalise counts to compare RNAseq results between two spcecies
DESeq2 RNAseq normalisation
updated 16 months ago by ▴ 30 • written 20 months ago by ▴ 340
0
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1
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436
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Do you need to sort bam files that you have intersected before with bedtools
bedtools bam
updated 11 months ago by 43k • written 21 months ago by ▴ 340
2
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1
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1.1k
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Answer: Answer: What is this visual/graph called? I am trying to achieve this using R.
21 months ago by LDT ▴ 340
1
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0
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388
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Correlation Plot of Two Biological Replicates of GRO-seq Data
groHMM GRO-seq HOMER
21 months ago by LDT ▴ 340
2
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0
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3.9k
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Answer: Answer: Transform a data.frame to GRranges in R
21 months ago by LDT ▴ 340
0
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0
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3.9k
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Comment: Comment: Transform a data.frame to GRranges in R
21 months ago by LDT ▴ 340
0
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2
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3.9k
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Comment: Comment: Transform a data.frame to GRranges in R
21 months ago by LDT ▴ 340
2
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1
reply
2.3k
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Convert an R data.frame to a bed file in R
bam bed bedtools R rtracklayer
updated 21 months ago by 13k • written 21 months ago by ▴ 340
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13k
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Comment: Comment: How to remove reads associated with a specific region from bam file?
21 months ago by LDT ▴ 340
0
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0
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1.2k
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Comment: Comment: Error in converting the column name into the rowname in R dataframe
22 months ago by LDT ▴ 340
0
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1
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1.2k
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Comment: Comment: Error in converting the column name into the rowname in R dataframe
22 months ago by LDT ▴ 340
0
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2
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1.2k
views
Answer: Answer: Error in converting the column name into the rowname in R dataframe
22 months ago by LDT ▴ 340
0
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1
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877
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Comment: Comment: How to remove Illumina Small RNA 3' Adapter?
22 months ago by LDT ▴ 340
4
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3
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877
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How to remove Illumina Small RNA 3' Adapter?
cutadapt trimm trimmomatic
updated 22 months ago by 142k • written 22 months ago by ▴ 340
0
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1
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1.1k
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Comment: Comment: How to remove polyAAA tails with Trimmomatic
22 months ago by LDT ▴ 340
1
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3
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1.1k
views
How to remove polyAAA tails with Trimmomatic
polyAAA trimming trimmomatic
updated 22 months ago by 142k • written 22 months ago by ▴ 340
1
vote
1
reply
416
views
blastn a query to a masked subject
refrence masked reference align blastn
updated 2.2 years ago by 15k • written 2.2 years ago by ▴ 340
9
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6
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2.4k
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Extract from a .bam file the reads that map to specific area in the reference genome
alignment sequences bam extract
updated 22 months ago by ★ 2.7k • written 2.3 years ago by ▴ 340
5
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1
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2.4k
views
Answer: Answer: Extract from a .bam file the reads that map to specific area in the reference ge
2.2 years ago by LDT ▴ 340
3
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6
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1.2k
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How can I extract part of the DNA sequences that align to a specific region in the reference from a .bam file?
bedtools alignment samtools bam sequences
2.2 years ago by LDT ▴ 340
2
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0
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1.2k
views
Answer: Answer: How can I extract part of the DNA sequences that align to a specific region in t
2.2 years ago by LDT ▴ 340
0
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0
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1.2k
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Comment: Comment: How can I extract part of the DNA sequences that align to a specific region in t
2.3 years ago by LDT ▴ 340
0
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1
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1.2k
views
Comment: Comment: How can I extract part of the DNA sequences that align to a specific region in t
2.3 years ago by LDT ▴ 340
0
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0
replies
2.4k
views
Comment: Comment: Extract from a .bam file the reads that map to specific area in the reference ge
2.3 years ago by LDT ▴ 340
1
vote
1
reply
605
views
How to map amplicon sequences to a reference with masked sequences?
reference amplicon bwa bowtie2 alignment
updated 13 months ago by ▴ 30 • written 2.4 years ago by ▴ 340
4
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2
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1.4k
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Extract strings based on multiple patterns in R
DNA strings Biostrings r Levenhstein
updated 2.4 years ago by 21k • written 2.4 years ago by ▴ 340
0
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1
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19k
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Comment: Comment: Splitting A Fasta File
2.8 years ago by LDT ▴ 340
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