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0
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1
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2.5k
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Comment:
C: How to use Kallisto | bustools workflow for fastq files where each sample has tw
4.6 years ago by
Farah
▴ 80
0
votes
0
replies
1.2k
views
Comment:
C: Is "Attribute Circle Layout" of a protein-protein network standard and acceptabl
4.6 years ago by
Farah
▴ 80
0
votes
0
replies
1.2k
views
Comment:
C: Is "Attribute Circle Layout" of a protein-protein network standard and acceptabl
4.6 years ago by
Farah
▴ 80
0
votes
0
replies
2.9k
views
Comment:
C: Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for
4.7 years ago by
Farah
▴ 80
0
votes
0
replies
2.9k
views
Comment:
C: Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for
4.7 years ago by
Farah
▴ 80
0
votes
1
reply
2.9k
views
Comment:
C: Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for
4.7 years ago by
Farah
▴ 80
2
votes
7
replies
2.9k
views
Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for doing "Ensemble of Gene Set Enrichment Analyses"
RNA-Seq
edgeR
EGSEA
limma
biomaRt
updated 4.7 years ago by
Ram
43k • written 4.7 years ago by
Farah
▴ 80
0
votes
0
replies
1.8k
views
Comment:
C: Ensemble of Gene Set Enrichment Analyses (EGSEA) for count matrix generated by D
4.7 years ago by
Farah
▴ 80
0
votes
1
reply
1.8k
views
Comment:
C: Ensemble of Gene Set Enrichment Analyses (EGSEA) for count matrix generated by D
4.7 years ago by
Farah
▴ 80
0
votes
0
replies
6.3k
views
Comment:
C: Error in tximport: all(file.exists(files)) is not TRUE
4.7 years ago by
Farah
▴ 80
1
vote
2
replies
6.3k
views
Error in tximport: all(file.exists(files)) is not TRUE
tximport
DESeq2
updated 4.7 years ago by
h.mon
35k • written 4.7 years ago by
Farah
▴ 80
0
votes
0
replies
3.0k
views
Comment:
C: How to change my colnames(count.table) as exactly similar to my rownames(meta)?
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
3.0k
views
Comment:
C: How to change my colnames(count.table) as exactly similar to my rownames(meta)?
4.8 years ago by
Farah
▴ 80
0
votes
1
reply
3.0k
views
Comment:
C: How to change my colnames(count.table) as exactly similar to my rownames(meta)?
4.8 years ago by
Farah
▴ 80
5
votes
9
replies
3.0k
views
How to change my colnames(count.table) as exactly similar to my rownames(meta)?
RNA-Seq
Kallisto
DESeq2
R
tximport
updated 4.8 years ago by
ATpoint
82k • written 4.8 years ago by
Farah
▴ 80
0
votes
0
replies
1.9k
views
Comment:
C: How to quantify the RNA-seq reads using Kallisto?
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
12k
views
Comment:
C: Build a Kallisto transcriptome index
4.8 years ago by
Farah
▴ 80
0
votes
1
reply
1.9k
views
Comment:
C: How to quantify the RNA-seq reads using Kallisto?
updated 4.8 years ago by
Ram
43k • written 4.8 years ago by
Farah
▴ 80
0
votes
1
reply
2.7k
views
Comment:
C: How to install SortMeRNA tool on my university HPC cluster?
updated 4.8 years ago by
Ram
43k • written 4.9 years ago by
Farah
▴ 80
4
votes
4
replies
1.9k
views
How to quantify the RNA-seq reads using Kallisto?
RNA-Seq
Kallisto
updated 4.8 years ago by
Ram
43k • written 4.8 years ago by
Farah
▴ 80
0
votes
1
reply
12k
views
Comment:
C: Build a Kallisto transcriptome index
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
46k
views
Comment:
C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.8 years ago by
Farah
▴ 80
1
vote
1
reply
46k
views
Comment:
C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.8 years ago by
Farah
▴ 80
0
votes
1
reply
46k
views
Comment:
C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.8 years ago by
Farah
▴ 80
0
votes
1
reply
12k
views
Comment:
C: Build a Kallisto transcriptome index
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
12k
views
Comment:
C: Build a Kallisto transcriptome index
4.8 years ago by
Farah
▴ 80
0
votes
1
reply
46k
views
Comment:
C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
updated 4.8 years ago by
finswimmer
16k • written 4.8 years ago by
Farah
▴ 80
3
votes
9
replies
12k
views
Build a Kallisto transcriptome index
Kallisto
RNA-Seq
pseudo-alignment
updated 4.8 years ago by
Lior Pachter
▴ 700 • written 4.8 years ago by
Farah
▴ 80
0
votes
0
replies
1.8k
views
Comment:
C: Running Trimmomatic for bulk RNAseq data
4.8 years ago by
Farah
▴ 80
0
votes
1
reply
1.8k
views
Comment:
C: Running Trimmomatic for bulk RNAseq data
4.8 years ago by
Farah
▴ 80
0
votes
1
reply
1.8k
views
Comment:
C: Running Trimmomatic for bulk RNAseq data
4.8 years ago by
Farah
▴ 80
0
votes
1
reply
1.8k
views
Comment:
C: Running Trimmomatic for bulk RNAseq data
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
1.8k
views
Comment:
C: Running Trimmomatic for bulk RNAseq data
updated 4.8 years ago by
GenoMax
142k • written 4.8 years ago by
Farah
▴ 80
0
votes
1
reply
1.8k
views
Comment:
C: Running Trimmomatic for bulk RNAseq data
updated 4.8 years ago by
GenoMax
142k • written 4.8 years ago by
Farah
▴ 80
4
votes
13
replies
1.8k
views
Running Trimmomatic for bulk RNAseq data
RNA-Seq
Trimmomatic
FastQC
4.8 years ago by
Farah
▴ 80
0
votes
1
reply
1.8k
views
Comment:
A: Running Trimmomatic for bulk RNAseq data
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
2.8k
views
Comment:
C: Running SortMeRNA for bulk RNAseq data
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
6.6k
views
Comment:
C: How to download RNA-seq dataset (fastq.gz files) from GEO and SRA databases?
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
2.7k
views
Comment:
C: How to install SortMeRNA tool on my university HPC cluster?
4.8 years ago by
Farah
▴ 80
1
vote
4
replies
2.8k
views
Running SortMeRNA for bulk RNAseq data
sortmerna
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.8 years ago by
Farah
▴ 80
3
votes
3
replies
6.6k
views
How to download RNA-seq dataset (fastq.gz files) from GEO and SRA databases?
fastq
SRA
RNA-Seq
GEO
updated 13 months ago by
Ram
43k • written 4.8 years ago by
Farah
▴ 80
0
votes
2
replies
1.2k
views
How to create plots correlating mRNA expression with PAM50 and my bait protein's expression using cBioPortal database?
cBioPortal
PAM50 assay
mRNA expression
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
1.2k
views
Answer:
A: How to create plots correlating mRNA expression with PAM50 and my bait protein's
4.8 years ago by
Farah
▴ 80
0
votes
0
replies
2.7k
views
Comment:
C: How to install SortMeRNA tool on my university HPC cluster?
4.9 years ago by
Farah
▴ 80
0
votes
1
reply
2.7k
views
Comment:
C: How to install SortMeRNA tool on my university HPC cluster?
4.9 years ago by
Farah
▴ 80
4
votes
9
replies
2.7k
views
How to install SortMeRNA tool on my university HPC cluster?
RNA-Seq
HPC
Cluster
cluster computing
updated 4.9 years ago by
AK
★ 2.2k • written 4.9 years ago by
Farah
▴ 80
0
votes
0
replies
2.4k
views
Comment:
C: How to mount my data into docker container through -v command?
5.0 years ago by
Farah
▴ 80
0
votes
0
replies
2.4k
views
Comment:
C: How to mount my data into docker container through -v command?
5.0 years ago by
Farah
▴ 80
0
votes
0
replies
2.4k
views
Comment:
C: How to mount my data into docker container through -v command?
5.0 years ago by
Farah
▴ 80
0
votes
6
replies
2.4k
views
How to mount my data into docker container through -v command?
rna-seq
docker
container
bash scripting
5.0 years ago by
Farah
▴ 80
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