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11
votes
12
replies
1.8k
views
7 follow
What do we call a transcript?
RNAseq mRNA CentralDogma Transcript Splicing
updated 2.2 years ago by 15k • written 2.2 years ago by ▴ 80
3
votes
6
replies
1.7k
views
What does an amino acid sequence that does not start with methionine mean?
de Trinity novo assembly protein TransDecoder
2.2 years ago by Riku ▴ 80
5
votes
7
replies
1.8k
views
6 follow
Is there a tool for plotting protein structures and domains?
domain Pfam protein-structure protein
updated 2.2 years ago by ★ 1.6k • written 2.2 years ago by ▴ 80
0
votes
3
replies
743
views
Is there any way to determine if a gene is due to contamination?
contamination RNAseq decontamination blast
updated 2.2 years ago by ★ 1.4k • written 2.2 years ago by ▴ 80
4
votes
8
replies
2.0k
views
Is there a way to mark up specific genes in MA-plot?
edgeR ggplot plot MA R
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 80
2
votes
4
replies
1.8k
views
Is there any way to create MA plot with edgeR output?
edgeR plot ggplot2 MA R
2.2 years ago by Riku ▴ 80
0
votes
1
reply
714
views
How to generate a Venn diagram from edgeR results?
RNAseq edgeR Venn Diagram R
updated 2.3 years ago by ▴ 10 • written 2.3 years ago by ▴ 80
3
votes
4
replies
914
views
How to edit domtblout?
bash HMMER Pfam awk domtblout
2.3 years ago by Riku ▴ 80
5
votes
6
replies
1.1k
views
Is there a way to change only the header of a fasta file?
awk seqkit fasta
updated 2.4 years ago by ★ 1.4k • written 2.4 years ago by ▴ 80
2
votes
2
replies
3.9k
views
No color key in my heatmap with heatmap2.
heatmap.2 Rstudio R
updated 14 months ago by 43k • written 2.4 years ago by ▴ 80
1
vote
2
replies
710
views
What alignment tools do you use?
alignment multipe-alignment linux
updated 14 months ago by 43k • written 2.4 years ago by ▴ 80
0
votes
4
replies
1.7k
views
Fasta_reader isn't working.
Fasta_reader fasta_seq_length.pl NGS RNAseq Trinity
updated 2.1 years ago by • 0 • written 2.5 years ago by ▴ 80
2
votes
6
replies
1.0k
views
Could you please tell me how to download genome file from ncbi?
fastq-dump sra-toolkit SRR
2.5 years ago by Riku ▴ 80
4
votes
2
replies
656
views
Could you give me some advices about how to edit a file?
awk bash Linux
updated 2.5 years ago by 8.9k • written 2.5 years ago by ▴ 80
1
vote
4
replies
1.0k
views
Is it possible to delete part of the header string?
bash Linux fasta
2.5 years ago by Riku ▴ 80
6
votes
9
replies
1.5k
views
Would you please give me some advices about how to change header?
bash Linux BLAST fasta
updated 2.5 years ago by 21k • written 2.5 years ago by ▴ 80
2
votes
16
replies
2.7k
views
How do I get description in BLAST?
blastx RNA-seq taxonomy BLAST
2.5 years ago by Riku ▴ 80
4
votes
2
replies
1.4k
views
The shape of the graph outputed by REVIGO is broken.
GO ggplot2 Enrichment_analysis REVIGO
2.5 years ago by Riku ▴ 80
1
vote
6
replies
1.8k
views
What is eggnog better than previous annotation in terms of?
eggnog RNAseq annotation
2.5 years ago by Riku ▴ 80
0
votes
1
reply
951
views
Is there anyway to make a graph of the result of GO enrichment analysis outputed by GOseq?
RNA-seq GOseq enrichment_analysis Trinity
updated 2.6 years ago by ▴ 310 • written 2.6 years ago by ▴ 80
4
votes
4
replies
1.6k
views
How do you get the result of BLAST like this paper?
R BLAST RNAseq Trinity
2.6 years ago by Riku ▴ 80
1
vote
5
replies
1.3k
views
Python doesn't switch between different each environments in Anaconda.
Anaconda Python
updated 2.6 years ago by 82k • written 2.6 years ago by ▴ 80
1
vote
9
replies
2.9k
views
The BLAST command stops with an error.
RNA-seq BLAST Trinity blastx
updated 2.6 years ago by 15k • written 2.6 years ago by ▴ 80
2
votes
2
replies
971
views
Is there a way to make the BLAST results easier to read?
RNA-seq BLAST Trinity
updated 2.6 years ago by ▴ 460 • written 2.6 years ago by ▴ 80
1
vote
4
replies
1.1k
views
What does it mean BLASTx in de novo RNAseq analysis?
assembly RNA-seq BLAST Trinity
2.6 years ago by Riku ▴ 80
3
votes
4
replies
1.9k
views
How can I get PHRED score?
novo PHRED Trinity de assembly RNAseq
2.6 years ago by Riku ▴ 80
4
votes
6
replies
3.5k
views
How to output MDS plot for RNAseq samples with ggplot2?
RNAseq MDSplot ggplot2 R
updated 2.6 years ago by 82k • written 2.6 years ago by ▴ 80
6
votes
4
replies
4.9k
views
Is there a way to convert “dist” to “data.frame”?
MDS ggplot2 RNAseq
2.6 years ago by Riku ▴ 80
4
votes
6
replies
1.3k
views
What are the rules for the basic statistic of de novo assembly in RNAseq?
Assembly Trinity RNAseq
2.6 years ago by Riku ▴ 80
29 results • Page 1 of 1
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