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11
votes
12
replies
2.2k
views
7 follow
What do we call a transcript?
RNAseq mRNA CentralDogma Transcript Splicing
updated 2.8 years ago by 15k • written 2.8 years ago by ▴ 80
3
votes
7
replies
2.6k
views
6 follow
What does an amino acid sequence that does not start with methionine mean?
de Trinity novo assembly protein TransDecoder
updated 6 months ago by ★ 28k • written 2.8 years ago by ▴ 80
5
votes
7
replies
2.4k
views
6 follow
Is there a tool for plotting protein structures and domains?
domain Pfam protein-structure protein
updated 2.8 years ago by ★ 1.7k • written 2.8 years ago by ▴ 80
0
votes
3
replies
872
views
Is there any way to determine if a gene is due to contamination?
contamination RNAseq decontamination blast
updated 2.8 years ago by ★ 1.5k • written 2.8 years ago by ▴ 80
4
votes
8
replies
2.4k
views
Is there a way to mark up specific genes in MA-plot?
edgeR ggplot plot MA R
updated 2.8 years ago by 21k • written 2.8 years ago by ▴ 80
2
votes
4
replies
2.3k
views
Is there any way to create MA plot with edgeR output?
edgeR plot ggplot2 MA R
2.8 years ago by Riku ▴ 80
0
votes
1
reply
844
views
How to generate a Venn diagram from edgeR results?
RNAseq edgeR Venn Diagram R
updated 2.9 years ago by ▴ 10 • written 2.9 years ago by ▴ 80
3
votes
4
replies
1.2k
views
How to edit domtblout?
bash HMMER Pfam awk domtblout
2.9 years ago by Riku ▴ 80
5
votes
6
replies
1.3k
views
Is there a way to change only the header of a fasta file?
awk seqkit fasta
updated 3.0 years ago by ★ 1.5k • written 3.0 years ago by ▴ 80
2
votes
2
replies
4.6k
views
No color key in my heatmap with heatmap2.
heatmap.2 Rstudio R
updated 22 months ago by 44k • written 3.0 years ago by ▴ 80
1
vote
2
replies
806
views
What alignment tools do you use?
alignment multipe-alignment linux
updated 22 months ago by 44k • written 3.0 years ago by ▴ 80
0
votes
4
replies
2.0k
views
Fasta_reader isn't working.
Fasta_reader fasta_seq_length.pl NGS RNAseq Trinity
updated 2.7 years ago by • 0 • written 3.1 years ago by ▴ 80
2
votes
6
replies
1.3k
views
Could you please tell me how to download genome file from ncbi?
fastq-dump sra-toolkit SRR
3.1 years ago by Riku ▴ 80
4
votes
2
replies
783
views
Could you give me some advices about how to edit a file?
awk bash Linux
updated 3.1 years ago by 9.0k • written 3.1 years ago by ▴ 80
1
vote
4
replies
1.2k
views
Is it possible to delete part of the header string?
bash Linux fasta
3.1 years ago by Riku ▴ 80
6
votes
9
replies
1.8k
views
Would you please give me some advices about how to change header?
bash Linux BLAST fasta
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 80
2
votes
16
replies
3.2k
views
How do I get description in BLAST?
blastx RNA-seq taxonomy BLAST
3.2 years ago by Riku ▴ 80
4
votes
2
replies
1.6k
views
The shape of the graph outputed by REVIGO is broken.
GO ggplot2 Enrichment_analysis REVIGO
3.1 years ago by Riku ▴ 80
1
vote
6
replies
2.2k
views
What is eggnog better than previous annotation in terms of?
eggnog RNAseq annotation
3.2 years ago by Riku ▴ 80
0
votes
1
reply
1.1k
views
Is there anyway to make a graph of the result of GO enrichment analysis outputed by GOseq?
RNA-seq GOseq enrichment_analysis Trinity
updated 3.2 years ago by ▴ 320 • written 3.2 years ago by ▴ 80
4
votes
4
replies
1.9k
views
How do you get the result of BLAST like this paper?
R BLAST RNAseq Trinity
3.2 years ago by Riku ▴ 80
1
vote
5
replies
1.5k
views
Python doesn't switch between different each environments in Anaconda.
Anaconda Python
updated 3.2 years ago by 86k • written 3.2 years ago by ▴ 80
1
vote
9
replies
3.3k
views
The BLAST command stops with an error.
RNA-seq BLAST Trinity blastx
updated 3.2 years ago by 15k • written 3.2 years ago by ▴ 80
2
votes
2
replies
1.1k
views
Is there a way to make the BLAST results easier to read?
RNA-seq BLAST Trinity
updated 3.2 years ago by ▴ 460 • written 3.2 years ago by ▴ 80
1
vote
4
replies
1.3k
views
What does it mean BLASTx in de novo RNAseq analysis?
assembly RNA-seq BLAST Trinity
3.2 years ago by Riku ▴ 80
3
votes
4
replies
2.3k
views
How can I get PHRED score?
novo PHRED Trinity de assembly RNAseq
3.2 years ago by Riku ▴ 80
4
votes
6
replies
4.0k
views
How to output MDS plot for RNAseq samples with ggplot2?
RNAseq MDSplot ggplot2 R
updated 3.2 years ago by 86k • written 3.2 years ago by ▴ 80
6
votes
4
replies
5.5k
views
Is there a way to convert “dist” to “data.frame”?
MDS ggplot2 RNAseq
3.3 years ago by Riku ▴ 80
4
votes
6
replies
1.4k
views
What are the rules for the basic statistic of de novo assembly in RNAseq?
Assembly Trinity RNAseq
3.3 years ago by Riku ▴ 80
29 results • Page 1 of 1
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