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questions
0
votes
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replies
412
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Normalize Count Data Intrasamples with limma voom
skcm
tcga
limma
voom
21 months ago by
Vitor1
▴ 120
0
votes
0
replies
379
views
Validate RNAseq Models in Microarray Data?
microarray
rnaseq
coxlasso
fpkm
21 months ago by
Vitor1
▴ 120
2
votes
4
replies
2.6k
views
When to use .vcf or .gvcf files from GATK HaplotypeCaller?
indel
gatk
calling
snp
variant
updated 3 days ago by
Medhat
9.7k • written 24 months ago by
Vitor1
▴ 120
4
votes
3
replies
646
views
Relevance for publications in a bioinformatics/computational biology job
publications
updated 22 months ago by
Ram
43k • written 2.1 years ago by
Vitor1
▴ 120
8
votes
3
replies
1.3k
views
Are the upregulated genes in one comparison the downregulated genes in the inverse comparison?
edgeR
expression
deseq2
gene
DEGs
updated 2.2 years ago by
Gordon Smyth
★ 7.1k • written 2.2 years ago by
Vitor1
▴ 120
1
vote
3
replies
831
views
Is it wrong to use only a random subset of a dataset?
ethics
research
dataset
updated 11 months ago by
Ram
43k • written 2.3 years ago by
Vitor1
▴ 120
1
vote
1
reply
1.4k
views
Can I use the SRA spot lenght (AvgSpotLen) as the read lenght?
illumina
GEO
SRA
updated 2.3 years ago by
GenoMax
142k • written 2.3 years ago by
Vitor1
▴ 120
1
vote
2
replies
1.3k
views
Multi-fasta file for gffread
gffread
gtf
fasta
updated 6 weeks ago by
alnam
▴ 10 • written 2.5 years ago by
Vitor1
▴ 120
2
votes
2
replies
909
views
StringTie merged transcripts for two different conditions
gtf
coverage
stringtie
updated 13 months ago by
Ram
43k • written 2.5 years ago by
Vitor1
▴ 120
3
votes
2
replies
1.2k
views
Server denied on SRA download
ENA
fastq
SRA
updated 2.5 years ago by
GenoMax
142k • written 2.5 years ago by
Vitor1
▴ 120
3
votes
4
replies
1.4k
views
Can I pass a fastq file twice in trimmomatic?
fastq
trimmomatic
quality
updated 2.5 years ago by
cpad0112
21k • written 2.6 years ago by
Vitor1
▴ 120
1
vote
2
replies
1.8k
views
Differences in HISAT2 indexes for download
mapping
human
index
hisat2
2.6 years ago by
Vitor1
▴ 120
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