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745
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Answer: Answer: Searching for RNA-seq melanoma samples in TCGA or cBioPortal
21 months ago by Vitor1 ▴ 120
0
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1
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716
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Comment: Comment: Ways to normalize for number of mitocondria in RNA-Seq data
21 months ago by Vitor1 ▴ 120
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1
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716
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Comment: Comment: Ways to normalize for number of mitocondria in RNA-Seq data
21 months ago by Vitor1 ▴ 120
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0
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405
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Normalize Count Data Intrasamples with limma voom
skcm tcga limma voom
21 months ago by Vitor1 ▴ 120
0
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0
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375
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Validate RNAseq Models in Microarray Data?
microarray rnaseq coxlasso fpkm
21 months ago by Vitor1 ▴ 120
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0
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2.4k
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Comment: Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller?
23 months ago by Vitor1 ▴ 120
2
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2
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2.4k
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When to use .vcf or .gvcf files from GATK HaplotypeCaller?
indel gatk calling snp variant
updated 23 months ago by 9.7k • written 23 months ago by ▴ 120
0
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0
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520
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Answer: Answer: Where to get raw rna sequencing files for a large database of cancer tissues/cel
24 months ago by Vitor1 ▴ 120
0
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0
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568
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Answer: Answer: How can I get into PhD straight from B. SC
2.0 years ago by Vitor1 ▴ 120
0
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1
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635
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Comment: Comment: Relevance for publications in a bioinformatics/computational biology job
2.1 years ago by Vitor1 ▴ 120
4
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3
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635
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Relevance for publications in a bioinformatics/computational biology job
publications
updated 22 months ago by 43k • written 2.1 years ago by ▴ 120
3
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0
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1.6k
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Comment: Comment: gene set enrichment in clusterprofiler
2.2 years ago by Vitor1 ▴ 120
2
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0
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620
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Answer: Answer: error in BiocManager::install("hgu95av2.db")
2.2 years ago by Vitor1 ▴ 120
1
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0
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684
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Answer: Answer: How to perform DESeq2 based on paired sample test?
2.2 years ago by Vitor1 ▴ 120
8
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3
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1.3k
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Are the upregulated genes in one comparison the downregulated genes in the inverse comparison?
edgeR expression deseq2 gene DEGs
updated 2.2 years ago by ★ 7.0k • written 2.2 years ago by ▴ 120
1
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0
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794
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Comment: Comment: Is it normal for most data to be lost when filtering data?
2.2 years ago by Vitor1 ▴ 120
1
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0
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746
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Comment: Comment: Hoe do you do differential Splicing using edgeR command diffSpliceDGE?
2.2 years ago by Vitor1 ▴ 120
1
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0
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1.3k
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Comment: Comment: Never use bowtie2 for mapping?
2.2 years ago by Vitor1 ▴ 120
0
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0
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495
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Comment: Comment: R ballgown - Obtain number of transcripts per gene per sample?
2.2 years ago by Vitor1 ▴ 120
1
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0
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1.7k
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Comment: Comment: Histat2 build command is taking too long
2.3 years ago by Vitor1 ▴ 120
0
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0
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894
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Answer: Answer: GEO RNA seq to DEG
2.3 years ago by Vitor1 ▴ 120
0
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1
reply
822
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Comment: Comment: Is it wrong to use only a random subset of a dataset?
2.3 years ago by Vitor1 ▴ 120
1
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3
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822
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Is it wrong to use only a random subset of a dataset?
ethics research dataset
updated 11 months ago by 43k • written 2.3 years ago by ▴ 120
1
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1
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1.4k
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Can I use the SRA spot lenght (AvgSpotLen) as the read lenght?
illumina GEO SRA
updated 2.3 years ago by 141k • written 2.3 years ago by ▴ 120
1
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2
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1.2k
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Multi-fasta file for gffread
gffread gtf fasta
updated 29 days ago by ▴ 10 • written 2.4 years ago by ▴ 120
0
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0
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895
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Comment: Comment: StringTie merged transcripts for two different conditions
2.4 years ago by Vitor1 ▴ 120
2
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2
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895
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StringTie merged transcripts for two different conditions
gtf coverage stringtie
updated 13 months ago by 43k • written 2.4 years ago by ▴ 120
3
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2
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1.1k
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Server denied on SRA download
ENA fastq SRA
updated 2.5 years ago by 141k • written 2.5 years ago by ▴ 120
0
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0
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14k
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Comment: Comment: How to get FASTQ reads from the Short Read Archive (SRA)
2.5 years ago by Vitor1 ▴ 120
0
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1
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1.3k
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Comment: Comment: Can I pass a fastq file twice in trimmomatic?
2.5 years ago by Vitor1 ▴ 120
3
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4
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1.3k
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Can I pass a fastq file twice in trimmomatic?
fastq trimmomatic quality
updated 2.5 years ago by 21k • written 2.5 years ago by ▴ 120
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0
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1.7k
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Comment: Comment: Differences in HISAT2 indexes for download
2.6 years ago by Vitor1 ▴ 120
1
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2
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1.7k
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Differences in HISAT2 indexes for download
mapping human index hisat2
2.6 years ago by Vitor1 ▴ 120
33 results • Page 1 of 1
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