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0
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2
replies
557
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Low coverage whole genome sequencing reveal excess heterozygosity for multiple SNPs. How to filter?
lcWGS WGS heterozygosity
6 months ago by beausoleilmo ▴ 590
0
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0
replies
557
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Comment: Comment: Low coverage whole genome sequencing reveal excess heterozygosity for multiple S
6 months ago by beausoleilmo ▴ 590
0
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0
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317
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How to extract only neutral markers from low-coverage whole genome sequencing?
low-coverage whole-genome-sequencing
updated 12 months ago by 44k • written 12 months ago by ▴ 590
2
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0
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7.5k
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Answer: Answer: VCF header line counting
12 months ago by beausoleilmo ▴ 590
0
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1
reply
6.1k
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Comment: Comment: Help making ADMIXTURE output digestible
16 months ago by beausoleilmo ▴ 590
0
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0
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6.7k
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Comment: Comment: Why Is Blast Creating Duplicates In My Output Files?!
18 months ago by beausoleilmo ▴ 590
2
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0
replies
677
views
How to convert a Beagle file 3.3 to VCF with beagle2vcf.jar?
conversion vcf beagle
18 months ago by beausoleilmo ▴ 590
0
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0
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606
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Comment: Comment: Left or right join between 2 BAM files (remove reads the should be filtered out
18 months ago by beausoleilmo ▴ 590
0
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2
replies
606
views
Left or right join between 2 BAM files (remove reads the should be filtered out for sex chromosomes)
sex chromosomes BAM filtering
18 months ago by beausoleilmo ▴ 590
2
votes
2
replies
882
views
How to rename chromosome_position column in a Beagle file and match it with the index fai?
chromosome index fai regex beagle
updated 20 months ago by ▴ 80 • written 20 months ago by ▴ 590
0
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0
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2.1k
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Comment: Comment: Is there a way to calculate breadth of coverage from a VCF?
20 months ago by beausoleilmo ▴ 590
2
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5
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2.1k
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Is there a way to calculate breadth of coverage from a VCF?
VCF Coverage Beagle
20 months ago by beausoleilmo ▴ 590
1
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0
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2.1k
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Answer: Answer: Is there a way to calculate breadth of coverage from a VCF?
20 months ago by beausoleilmo ▴ 590
0
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0
replies
55k
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Comment: Comment: How to extract specific chromosome from vcf file
20 months ago by beausoleilmo ▴ 590
0
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0
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14k
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Comment: Comment: Convert fastq.gz to fastq.bgz
20 months ago by beausoleilmo ▴ 590
0
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1
reply
14k
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Comment: Comment: Convert fastq.gz to fastq.bgz
20 months ago by beausoleilmo ▴ 590
0
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0
replies
2.1k
views
Comment: Comment: Is there a way to calculate breadth of coverage from a VCF?
20 months ago by beausoleilmo ▴ 590
0
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0
replies
4.5k
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Comment: Comment: Calculate Fst to draw Manhattan plot
2.2 years ago by beausoleilmo ▴ 590
0
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0
replies
4.8k
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Comment: Comment: Error while creating .geno file with LEA
3.1 years ago by beausoleilmo ▴ 590
0
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0
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1.7k
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Comment: C: Detect sex chromosomes from WGS on a bird species (with reference genome)
3.9 years ago by beausoleilmo ▴ 590
2
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2
replies
2.2k
views
Error running sam-dump
sam NCBI BAM samtools
updated 3.9 years ago by 20 • written 7.6 years ago by ▴ 590
2
votes
8
replies
1.7k
views
Detect sex chromosomes from WGS on a bird species (with reference genome)
WGS chromosomes
updated 2.9 years ago by ▴ 30 • written 4.3 years ago by ▴ 590
0
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0
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4.8k
views
Comment: C: Error while creating .geno file with LEA
3.9 years ago by beausoleilmo ▴ 590
6
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5
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4.8k
views
Error while creating .geno file with LEA
LEA geno VCF
3.1 years ago by beausoleilmo ▴ 590
0
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0
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4.8k
views
Comment: C: Error while creating .geno file with LEA
4.0 years ago by beausoleilmo ▴ 590
0
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0
replies
1.7k
views
Comment: C: Detect sex chromosomes from WGS on a bird species (with reference genome)
4.2 years ago by beausoleilmo ▴ 590
0
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2
replies
1.7k
views
Comment: C: Detect sex chromosomes from WGS on a bird species (with reference genome)
4.3 years ago by beausoleilmo ▴ 590
0
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0
replies
10k
views
Answer: A: dxy (Nei 1987) calculation
4.3 years ago by beausoleilmo ▴ 590
0
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0
replies
2.8k
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Comment: C: ShapeIt giving Segfault 11?
4.3 years ago by beausoleilmo ▴ 590
1
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0
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1.6k
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Building a reference database for metabarcoding and obitools
embl metabarcoding reference database plants diet
4.3 years ago by beausoleilmo ▴ 590
0
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0
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4.1k
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Answer: A: Admixture - Abort trap: 6
4.3 years ago by beausoleilmo ▴ 590
8
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2
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33k
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Answer: Answer: Sort VCF File by Position?
4.3 years ago by beausoleilmo ▴ 590
0
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0
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8.1k
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Comment: C: Fast LD computation from VCF files using tomahawk
4.4 years ago by beausoleilmo ▴ 590
0
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0
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24k
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Comment: C: LD-decay in a r2 vs distance(cm) plot
4.4 years ago by beausoleilmo ▴ 590
3
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0
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7.4k
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Answer: A: How to parallelize bcftools mpileup with GNU parallel?
4.4 years ago by beausoleilmo ▴ 590
8
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6
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7.4k
views
6 follow
How to parallelize bcftools mpileup with GNU parallel?
bcftools mpileup parallel
updated 2.6 years ago by ▴ 60 • written 4.4 years ago by ▴ 590
16
votes
3
replies
12k
views
What is the difference between mpileup samtools and bcftools?
bcftools samtools mpileup variant calling SNP
updated 4.4 years ago by ★ 1.2k • written 4.4 years ago by ▴ 590
0
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0
replies
12k
views
Comment: C: What is the difference between mpileup samtools and bcftools?
4.4 years ago by beausoleilmo ▴ 590
7
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6
replies
5.0k
views
Running BWA mem in a for loop
BWA alignment WGS
updated 4.4 years ago by ▴ 220 • written 4.4 years ago by ▴ 590
0
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0
replies
5.0k
views
Comment: C: Running BWA mem in a for loop
4.4 years ago by beausoleilmo ▴ 590
0
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1
reply
5.0k
views
Comment: C: Running BWA mem in a for loop
4.4 years ago by beausoleilmo ▴ 590
0
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0
replies
49k
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Comment: C: How do you cite a tool that doesn't have a publication?
4.4 years ago by beausoleilmo ▴ 590
0
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0
replies
1.3k
views
Comment: C: ecoPCR won't install on Mac (Mojave 10.14.5)
4.7 years ago by beausoleilmo ▴ 590
2
votes
2
replies
1.3k
views
ecoPCR won't install on Mac (Mojave 10.14.5)
ecoPCR metabarcoding
4.7 years ago by beausoleilmo ▴ 590
1
vote
1
reply
1.1k
views
Chromosome naming convention: Why are there chromosomes named "1" and "1A"?
Chromosome Zebra Finch
4.8 years ago by beausoleilmo ▴ 590
0
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0
replies
1.8k
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Comment: C: Is it a problem that the reference genome is not at the chromosome level?
4.9 years ago by beausoleilmo ▴ 590
0
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1
reply
1.8k
views
Comment: C: Is it a problem that the reference genome is not at the chromosome level?
4.9 years ago by beausoleilmo ▴ 590
0
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1
reply
1.8k
views
Comment: C: Is it a problem that the reference genome is not at the chromosome level?
4.9 years ago by beausoleilmo ▴ 590
6
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6
replies
1.8k
views
Is it a problem that the reference genome is not at the chromosome level?
Chromosome reference genome scaffolds
updated 4.9 years ago by ★ 3.8k • written 4.9 years ago by ▴ 590
0
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0
replies
2.0k
views
Comment: C: How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (rem
5.4 years ago by beausoleilmo ▴ 590
142 results • Page 1 of 3
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