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0
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2
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991
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Low coverage whole genome sequencing reveal excess heterozygosity for multiple SNPs. How to filter?
lcWGS WGS heterozygosity
16 months ago by beausoleilmo ▴ 600
0
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0
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991
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Comment: Comment: Low coverage whole genome sequencing reveal excess heterozygosity for multiple S
16 months ago by beausoleilmo ▴ 600
0
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0
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453
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How to extract only neutral markers from low-coverage whole genome sequencing?
low-coverage whole-genome-sequencing
updated 22 months ago by 45k • written 22 months ago by ▴ 600
2
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0
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8.3k
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Answer: Answer: VCF header line counting
23 months ago by beausoleilmo ▴ 600
0
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1
reply
7.1k
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Comment: Comment: Help making ADMIXTURE output digestible
2.2 years ago by beausoleilmo ▴ 600
0
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0
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7.4k
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Comment: Comment: Why Is Blast Creating Duplicates In My Output Files?!
2.3 years ago by beausoleilmo ▴ 600
2
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0
replies
942
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How to convert a Beagle file 3.3 to VCF with beagle2vcf.jar?
conversion vcf beagle
2.4 years ago by beausoleilmo ▴ 600
0
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0
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782
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Comment: Comment: Left or right join between 2 BAM files (remove reads the should be filtered out
2.4 years ago by beausoleilmo ▴ 600
0
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2
replies
782
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Left or right join between 2 BAM files (remove reads the should be filtered out for sex chromosomes)
sex chromosomes BAM filtering
2.4 years ago by beausoleilmo ▴ 600
2
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2
replies
1.1k
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How to rename chromosome_position column in a Beagle file and match it with the index fai?
chromosome index fai regex beagle
updated 2.5 years ago by ▴ 80 • written 2.5 years ago by ▴ 600
0
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0
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2.8k
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Comment: Comment: Is there a way to calculate breadth of coverage from a VCF?
2.5 years ago by beausoleilmo ▴ 600
2
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5
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2.8k
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Is there a way to calculate breadth of coverage from a VCF?
VCF Coverage Beagle
2.5 years ago by beausoleilmo ▴ 600
1
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0
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2.8k
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Answer: Answer: Is there a way to calculate breadth of coverage from a VCF?
2.5 years ago by beausoleilmo ▴ 600
0
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0
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62k
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Comment: Comment: How to extract specific chromosome from vcf file
2.5 years ago by beausoleilmo ▴ 600
0
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0
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16k
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Comment: Comment: Convert fastq.gz to fastq.bgz
2.5 years ago by beausoleilmo ▴ 600
0
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1
reply
16k
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Comment: Comment: Convert fastq.gz to fastq.bgz
2.6 years ago by beausoleilmo ▴ 600
0
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0
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2.8k
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Comment: Comment: Is there a way to calculate breadth of coverage from a VCF?
2.6 years ago by beausoleilmo ▴ 600
0
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0
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4.8k
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Comment: Comment: Calculate Fst to draw Manhattan plot
3.1 years ago by beausoleilmo ▴ 600
0
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0
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5.6k
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Comment: Comment: Error while creating .geno file with LEA
3.9 years ago by beausoleilmo ▴ 600
0
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0
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2.2k
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Comment: C: Detect sex chromosomes from WGS on a bird species (with reference genome)
4.7 years ago by beausoleilmo ▴ 600
2
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2
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2.5k
views
Error running sam-dump
sam NCBI BAM samtools
updated 4.7 years ago by 20 • written 8.5 years ago by ▴ 600
2
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8
replies
2.2k
views
Detect sex chromosomes from WGS on a bird species (with reference genome)
WGS chromosomes
updated 3.7 years ago by ▴ 30 • written 5.2 years ago by ▴ 600
0
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0
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5.6k
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Comment: C: Error while creating .geno file with LEA
4.8 years ago by beausoleilmo ▴ 600
6
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5
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5.6k
views
Error while creating .geno file with LEA
LEA geno VCF
3.9 years ago by beausoleilmo ▴ 600
0
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0
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5.6k
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Comment: C: Error while creating .geno file with LEA
4.8 years ago by beausoleilmo ▴ 600
0
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0
replies
2.2k
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Comment: C: Detect sex chromosomes from WGS on a bird species (with reference genome)
5.1 years ago by beausoleilmo ▴ 600
0
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2
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2.2k
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Comment: C: Detect sex chromosomes from WGS on a bird species (with reference genome)
5.2 years ago by beausoleilmo ▴ 600
0
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0
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11k
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Answer: A: dxy (Nei 1987) calculation
5.2 years ago by beausoleilmo ▴ 600
0
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0
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3.0k
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Comment: C: ShapeIt giving Segfault 11?
5.2 years ago by beausoleilmo ▴ 600
1
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0
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1.9k
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Building a reference database for metabarcoding and obitools
embl metabarcoding reference database plants diet
5.2 years ago by beausoleilmo ▴ 600
0
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0
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4.5k
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Answer: A: Admixture - Abort trap: 6
5.2 years ago by beausoleilmo ▴ 600
9
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2
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38k
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Answer: Answer: Sort VCF File by Position?
5.2 years ago by beausoleilmo ▴ 600
0
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0
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9.3k
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Comment: C: Fast LD computation from VCF files using tomahawk
5.2 years ago by beausoleilmo ▴ 600
0
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0
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27k
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Comment: C: LD-decay in a r2 vs distance(cm) plot
5.2 years ago by beausoleilmo ▴ 600
3
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0
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8.6k
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Answer: A: How to parallelize bcftools mpileup with GNU parallel?
5.2 years ago by beausoleilmo ▴ 600
8
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6
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8.6k
views
6 follow
How to parallelize bcftools mpileup with GNU parallel?
bcftools mpileup parallel
updated 3.5 years ago by ▴ 60 • written 5.2 years ago by ▴ 600
16
votes
3
replies
14k
views
What is the difference between mpileup samtools and bcftools?
bcftools samtools mpileup variant calling SNP
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by ▴ 600
0
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0
replies
14k
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Comment: C: What is the difference between mpileup samtools and bcftools?
5.2 years ago by beausoleilmo ▴ 600
7
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6
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5.6k
views
Running BWA mem in a for loop
BWA alignment WGS
updated 5.2 years ago by ▴ 220 • written 5.2 years ago by ▴ 600
0
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0
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5.6k
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Comment: C: Running BWA mem in a for loop
5.2 years ago by beausoleilmo ▴ 600
0
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1
reply
5.6k
views
Comment: C: Running BWA mem in a for loop
5.2 years ago by beausoleilmo ▴ 600
0
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0
replies
54k
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Comment: C: How do you cite a tool that doesn't have a publication?
5.2 years ago by beausoleilmo ▴ 600
0
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0
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1.5k
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Comment: C: ecoPCR won't install on Mac (Mojave 10.14.5)
5.6 years ago by beausoleilmo ▴ 600
2
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2
replies
1.5k
views
ecoPCR won't install on Mac (Mojave 10.14.5)
ecoPCR metabarcoding
5.6 years ago by beausoleilmo ▴ 600
1
vote
1
reply
1.3k
views
Chromosome naming convention: Why are there chromosomes named "1" and "1A"?
Chromosome Zebra Finch
5.6 years ago by beausoleilmo ▴ 600
0
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0
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2.6k
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Comment: C: Is it a problem that the reference genome is not at the chromosome level?
5.7 years ago by beausoleilmo ▴ 600
0
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1
reply
2.6k
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Comment: C: Is it a problem that the reference genome is not at the chromosome level?
5.7 years ago by beausoleilmo ▴ 600
0
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1
reply
2.6k
views
Comment: C: Is it a problem that the reference genome is not at the chromosome level?
5.7 years ago by beausoleilmo ▴ 600
6
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6
replies
2.6k
views
Is it a problem that the reference genome is not at the chromosome level?
Chromosome reference genome scaffolds
updated 5.7 years ago by ★ 3.8k • written 5.7 years ago by ▴ 600
0
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0
replies
2.3k
views
Comment: C: How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (rem
6.2 years ago by beausoleilmo ▴ 600
142 results • Page 1 of 3
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