Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
2
replies
1.4k
views
Low coverage whole genome sequencing reveal excess heterozygosity for multiple SNPs. How to filter?
lcWGS WGS heterozygosity
23 months ago by beausoleilmo ▴ 610
0
votes
0
replies
1.4k
views
Comment: Comment: Low coverage whole genome sequencing reveal excess heterozygosity for multiple S
23 months ago by beausoleilmo ▴ 610
0
votes
0
replies
625
views
How to extract only neutral markers from low-coverage whole genome sequencing?
low-coverage whole-genome-sequencing
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 610
2
votes
0
replies
8.9k
views
Answer: Answer: VCF header line counting
2.4 years ago by beausoleilmo ▴ 610
0
votes
1
reply
7.9k
views
Comment: Comment: Help making ADMIXTURE output digestible
2.8 years ago by beausoleilmo ▴ 610
0
votes
0
replies
8.2k
views
Comment: Comment: Why Is Blast Creating Duplicates In My Output Files?!
2.9 years ago by beausoleilmo ▴ 610
2
votes
0
replies
1.2k
views
How to convert a Beagle file 3.3 to VCF with beagle2vcf.jar?
conversion vcf beagle
2.9 years ago by beausoleilmo ▴ 610
0
votes
0
replies
1.0k
views
Comment: Comment: Left or right join between 2 BAM files (remove reads the should be filtered out
2.9 years ago by beausoleilmo ▴ 610
0
votes
2
replies
1.0k
views
Left or right join between 2 BAM files (remove reads the should be filtered out for sex chromosomes)
sex chromosomes BAM filtering
2.9 years ago by beausoleilmo ▴ 610
2
votes
2
replies
1.5k
views
How to rename chromosome_position column in a Beagle file and match it with the index fai?
chromosome index fai regex beagle
updated 3.1 years ago by ▴ 80 • written 3.1 years ago by ▴ 610
0
votes
0
replies
3.3k
views
Comment: Comment: Is there a way to calculate breadth of coverage from a VCF?
3.1 years ago by beausoleilmo ▴ 610
2
votes
5
replies
3.3k
views
Is there a way to calculate breadth of coverage from a VCF?
VCF Coverage Beagle
3.1 years ago by beausoleilmo ▴ 610
1
vote
0
replies
3.3k
views
Answer: Answer: Is there a way to calculate breadth of coverage from a VCF?
3.1 years ago by beausoleilmo ▴ 610
0
votes
0
replies
65k
views
Comment: Comment: How to extract specific chromosome from vcf file
3.1 years ago by beausoleilmo ▴ 610
0
votes
0
replies
17k
views
Comment: Comment: Convert fastq.gz to fastq.bgz
3.1 years ago by beausoleilmo ▴ 610
0
votes
1
reply
17k
views
Comment: Comment: Convert fastq.gz to fastq.bgz
3.1 years ago by beausoleilmo ▴ 610
0
votes
0
replies
3.3k
views
Comment: Comment: Is there a way to calculate breadth of coverage from a VCF?
3.1 years ago by beausoleilmo ▴ 610
0
votes
0
replies
5.2k
views
Comment: Comment: Calculate Fst to draw Manhattan plot
3.6 years ago by beausoleilmo ▴ 610
0
votes
0
replies
6.2k
views
Comment: Comment: Error while creating .geno file with LEA
4.4 years ago by beausoleilmo ▴ 610
0
votes
0
replies
2.7k
views
Comment: C: Detect sex chromosomes from WGS on a bird species (with reference genome)
5.2 years ago by beausoleilmo ▴ 610
2
votes
2
replies
2.8k
views
Error running sam-dump
sam NCBI BAM samtools
updated 5.2 years ago by 20 • written 9.0 years ago by ▴ 610
2
votes
8
replies
2.7k
views
Detect sex chromosomes from WGS on a bird species (with reference genome)
WGS chromosomes
updated 4.2 years ago by ▴ 30 • written 5.7 years ago by ▴ 610
0
votes
0
replies
6.2k
views
Comment: C: Error while creating .geno file with LEA
5.3 years ago by beausoleilmo ▴ 610
6
votes
5
replies
6.2k
views
Error while creating .geno file with LEA
LEA geno VCF
4.4 years ago by beausoleilmo ▴ 610
0
votes
0
replies
6.2k
views
Comment: C: Error while creating .geno file with LEA
5.4 years ago by beausoleilmo ▴ 610
0
votes
0
replies
2.7k
views
Comment: C: Detect sex chromosomes from WGS on a bird species (with reference genome)
5.6 years ago by beausoleilmo ▴ 610
0
votes
2
replies
2.7k
views
Comment: C: Detect sex chromosomes from WGS on a bird species (with reference genome)
5.7 years ago by beausoleilmo ▴ 610
0
votes
0
replies
12k
views
Answer: A: dxy (Nei 1987) calculation
5.7 years ago by beausoleilmo ▴ 610
0
votes
0
replies
3.3k
views
Comment: C: ShapeIt giving Segfault 11?
5.7 years ago by beausoleilmo ▴ 610
1
vote
0
replies
2.1k
views
Building a reference database for metabarcoding and obitools
embl metabarcoding reference database plants diet
5.7 years ago by beausoleilmo ▴ 610
0
votes
0
replies
4.8k
views
Answer: A: Admixture - Abort trap: 6
5.7 years ago by beausoleilmo ▴ 610
9
votes
2
replies
40k
views
Answer: Answer: Sort VCF File by Position?
5.7 years ago by beausoleilmo ▴ 610
0
votes
0
replies
10k
views
Comment: C: Fast LD computation from VCF files using tomahawk
5.7 years ago by beausoleilmo ▴ 610
0
votes
0
replies
30k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
5.7 years ago by beausoleilmo ▴ 610
3
votes
0
replies
9.7k
views
Answer: A: How to parallelize bcftools mpileup with GNU parallel?
5.7 years ago by beausoleilmo ▴ 610
8
votes
6
replies
9.7k
views
6 follow
How to parallelize bcftools mpileup with GNU parallel?
bcftools mpileup parallel
updated 4.0 years ago by ▴ 60 • written 5.8 years ago by ▴ 610
16
votes
3
replies
16k
views
What is the difference between mpileup samtools and bcftools?
bcftools samtools mpileup variant calling SNP
updated 5.8 years ago by ★ 1.3k • written 5.8 years ago by ▴ 610
0
votes
0
replies
16k
views
Comment: C: What is the difference between mpileup samtools and bcftools?
5.8 years ago by beausoleilmo ▴ 610
7
votes
6
replies
6.1k
views
Running BWA mem in a for loop
BWA alignment WGS
updated 5.8 years ago by ▴ 220 • written 5.8 years ago by ▴ 610
0
votes
0
replies
6.1k
views
Comment: C: Running BWA mem in a for loop
5.8 years ago by beausoleilmo ▴ 610
0
votes
1
reply
6.1k
views
Comment: C: Running BWA mem in a for loop
5.8 years ago by beausoleilmo ▴ 610
0
votes
0
replies
58k
views
Comment: C: How do you cite a tool that doesn't have a publication?
5.8 years ago by beausoleilmo ▴ 610
0
votes
0
replies
1.7k
views
Comment: C: ecoPCR won't install on Mac (Mojave 10.14.5)
6.1 years ago by beausoleilmo ▴ 610
2
votes
2
replies
1.7k
views
ecoPCR won't install on Mac (Mojave 10.14.5)
ecoPCR metabarcoding
6.1 years ago by beausoleilmo ▴ 610
1
vote
1
reply
1.5k
views
Chromosome naming convention: Why are there chromosomes named "1" and "1A"?
Chromosome Zebra Finch
6.1 years ago by beausoleilmo ▴ 610
0
votes
0
replies
3.2k
views
Comment: C: Is it a problem that the reference genome is not at the chromosome level?
6.2 years ago by beausoleilmo ▴ 610
0
votes
1
reply
3.2k
views
Comment: C: Is it a problem that the reference genome is not at the chromosome level?
6.2 years ago by beausoleilmo ▴ 610
0
votes
1
reply
3.2k
views
Comment: C: Is it a problem that the reference genome is not at the chromosome level?
6.2 years ago by beausoleilmo ▴ 610
6
votes
6
replies
3.2k
views
Is it a problem that the reference genome is not at the chromosome level?
Chromosome reference genome scaffolds
updated 6.2 years ago by ★ 3.8k • written 6.2 years ago by ▴ 610
0
votes
0
replies
2.6k
views
Comment: C: How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (rem
6.8 years ago by beausoleilmo ▴ 610
142 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6