The Galaxy Bioinformatics Portal software is becoming increasingly popular as a way to run command line bioinformatics software from the web, as well as defining workflows of chained runs through different tools.
Galaxy has some serious issues though when it comes to running it in a secure way on a HPC cluster with hundreds of users, and letting it access system wide file systems etc.
Hopefully this will change over time, as the core devs realize the wish to run Galaxy on HPC clusters, but in the meanwhile, I was wondering what other similar software there is out there?
The features I'm intereseted are:
- Ability to wrap command line tools (configure their flags and options in a form)
- HPC integration - being able to run jobs on a cluster
- (preferrably) Web interface