Question: Ensembl ID to Gene Symbol
2
gravatar for Pranavathiyani G
2.2 years ago by
Pondicherry, India
Pranavathiyani G200 wrote:

I have a list of Ensembl Gene IDs, how can I convert them to Gene Symbols?

Eg: ENSG00000210049 ENSG00000211459 ENSG00000210077 ENSG00000210082 ENSG00000209082 ENSG00000198888 ENSG00000210100 ENSG00000210107 ENSG00000210112

id conversion tool gene • 10k views
ADD COMMENTlink modified 2.2 years ago by WouterDeCoster30k • written 2.2 years ago by Pranavathiyani G200
2

Though you find many answers in this forum (also from google), here is a hint. Search google for Biological database network and go to the first link and explore. But next time, please show us what you have tried which is not working as you expected.

ADD REPLYlink written 2.2 years ago by venu5.4k

Thank you very much! That's perfect!

https://biodbnet-abcc.ncifcrf.gov/db/db2db.php

ADD REPLYlink modified 2.2 years ago • written 2.2 years ago by natasha.sernova3.0k

Has the question been edited? This comment doesn't seem to match.

ADD REPLYlink written 2.2 years ago by Emily_Ensembl15k
1

If you follow the instructions, it takes you to a gene/id mapping tool at bioDBnet. So it does answer the question in a particularly obtuse way. Also the real answer is BioMart ;)

ADD REPLYlink written 2.2 years ago by Daniel Swan13k

I commented on the "biological database network" comment, which seems completely unrelated.

ADD REPLYlink written 2.2 years ago by Emily_Ensembl15k

@Emily_Ensembl - I don't think it is unrelated. On the homepage of bioDBnet we can find db2db handles all the conversions from one database identifier to another

ADD REPLYlink modified 2.2 years ago • written 2.2 years ago by venu5.4k

The actual answer given by Natasha is relevant, but asking someone to Google a phrase which appears completely unrelated, and is not obviously a tool name, seems fairly obtuse. The decent answer is to suggest someone a suitable tool, with a link, and why it might be useful to them.

ADD REPLYlink written 2.2 years ago by Emily_Ensembl15k

Apologies if it is misleading. I thought it is the similar way of saying 'you can use BioMart' or something instead of giving direct answer.

ADD REPLYlink written 2.2 years ago by venu5.4k

The answer to most questions is bedtools or biomart :o

ADD REPLYlink written 2.2 years ago by WouterDeCoster30k
1
gravatar for natasha.sernova
2.2 years ago by
natasha.sernova3.0k
natasha.sernova3.0k wrote:

See this post C: GC content calculation

and Biomart URL Devon gave. In the upper right small window I've chosen 'Search ENSEMBLE genomes'

This is what I received for your first and second numbers:

MT-TF (Human Gene) ENSG00000210049 MT:577-647:1 Mitochondrially encoded tRNA phenylalanine [Source:HGNC Symbol;Acc:HGNC:7481] MT-TF (HGNC Symbol record with a description of mitochondrially encoded tRNA phenylalanine), with synonyms of MTTF, trnF, is associated with Gene ENSG00000210049

MT-RNR1 [ ENSG00000211459 ] [ Transcript ENST00000389680 ] Gene ID ENSG00000211459 Description Mitochondrially encoded 12S RNA Species Homo sapiens

See the Frequently asked questions and read other manuals or tutorials. For example, see urls below:

http://www.ensembl.org/info/index.html AND http://www.ensembl.org/info/data/biomart/index.html

See also these urls:

http://genomewiki.ucsc.edu/index.php/Gene_id_conversion

with this description:

http://genomewiki.ucsc.edu/index.php/Gene_id_conversion#With_Biomart_.28for_Ensembl_IDs.29

ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by natasha.sernova3.0k
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