Question: local web BLAST server
4
gravatar for Ric
2.6 years ago by
Ric330
Australia
Ric330 wrote:

Hello, I look for a local web BLAST server which I could set up for our group. Is there any which support to submit jobs and when the results ready is the user gets an email notification?

Thank you in advance

blast • 2.4k views
ADD COMMENTlink modified 2.6 years ago by lieven.sterck9.5k • written 2.6 years ago by Ric330

Came across this: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4769840/ You can also use Galaxy or make something yourself from skretch.

ADD REPLYlink written 2.6 years ago by gb1.9k

It is not clear which OS platform you're using but you can always use mail on the Linux/Unix environment.

ADD REPLYlink written 2.6 years ago by Sej Modha4.7k

Are you planning to run those blast jobs on a cluster, if so you usually can configure your cluster jobs to send a mail when the job is finished.

Implementing it in a galaxy (it will even be already available in the galaxy tool shed I assume) as suggested by gb is another option

ADD REPLYlink written 2.6 years ago by lieven.sterck9.5k

See this post A: How to start with blast and a local database

ADD REPLYlink written 2.6 years ago by gb1.9k
4
gravatar for Jake Warner
2.6 years ago by
Jake Warner810
Jake Warner810 wrote:

It doesn't email but I've found sequence server to be very useful as a local blast server.

I also wrote one that runs on R-shiny to which you could easily add the mail tool from Sej Modha's comment. Just change the output to a txt and send that as the mail message.

ADD COMMENTlink written 2.6 years ago by Jake Warner810

Thanks @Jake Warner for mentioning sequenceserver. @Ric, please let us know if you encounter any challenges.

ADD REPLYlink modified 8 months ago • written 8 months ago by Yannick Wurm2.3k
0
gravatar for lieven.sterck
2.6 years ago by
lieven.sterck9.5k
VIB, Ghent, Belgium
lieven.sterck9.5k wrote:

Here's another post that might be interesting for your purpose:

C: How to start with blast and a local database

ADD COMMENTlink written 2.6 years ago by lieven.sterck9.5k
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