Question: RIP-Seq data analysis
0
gravatar for flyguymail22
8 months ago by
flyguymail220 wrote:

Hi

I have performed a RIP-Seq experiment, that is RNA Immunoprecipitation followed by RNA sequencing. Does anyone know of an established pipeline or tool as to how to analyse this data?

Thank You. FlyGuy

sequencing rna-seq ip peak • 609 views
ADD COMMENTlink modified 3 months ago by Konstantinos Yeles70 • written 8 months ago by flyguymail220
1

enter image description here

Tried or searched for anything yet, e.g. via the search function?

ADD REPLYlink modified 8 months ago • written 8 months ago by ATpoint25k
0
gravatar for Konstantinos Yeles
3 months ago by
Italy/Salerno
Konstantinos Yeles70 wrote:

You can use RIPSeeker package from Bioconductor, or you could perform a "differential enrichment" analysis with edgeR / DESeq2 packages.

ADD COMMENTlink written 3 months ago by Konstantinos Yeles70
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