I know NCBI, EBI, Ensembl or more other bioinformation database ,and MAQ, SOAP, BWA ... more other softwares. But most are from big genome center or sequence group. So I wanna know if there is some pure software company or studio who develop software in Bioinformatics and Genomics ,and who are they ?
Just companies selling software/databases or services as well?
Yeah,include them .
So many software list but less company/studio list >=<
Our company, Creative Bioinformatics Consultants www.creativebioinformatics.com) provides user-directed, customized data analysis and software creation for small-to-medium sized projects from academic labs and biotechnology companies that do not have the capabilities or resources to do the work in house. Please contact us via our website or at email@example.com to discuss your project and receive a quote.
Avadis NGS from Strand Lifesciences, is an integrated platform that provides analysis, management and visualization tools for next-generation sequencing data. It supports extensive workflows for alignment, RNA-Seq, small RNA-Seq, DNA-Seq, and ChIP-Seq experiments.
Avadis NGS comes pre-packaged with comprehensive annotations for several standard organisms from various sources and enables you to create annotations for other organisms. It includes an embedded feature-rich Genome Browser and provides custom visualizations to provide an intuitive feel for analysis results. Various quality control plots and filtering steps ensure that any poor quality data is kept out of downstream analysis. Biological interpretation and discovery tools such as Gene Ontology enrichment, GSEA, NLP derived interaction network analysis, and significant pathways analysis enable taking the analysis all the way from reads to the end goal of the experiment. For more information visit www.avadis-ngs.com