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<prev • 117 results • page 1 of 4 • next >
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Mate mismatch errors in 1000genomes CRAM files
validatesam 1000genomes fixmate matepairs cram written 5 weeks ago by Mehulsharma.253 • 10
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6 follow
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Extract SNPs and SNP ID's from vcf file
vcf 1000genomes snps extract written 15 months ago by aadhirareddy1323 • 20 • updated 8 weeks ago by zx8754 ♦ 6.5k
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How to extract SNPs from vcf file based on Population
vcf 1000genomes linux written 13 months ago by aadhirareddy1323 • 20 • updated 8 weeks ago by zx8754 ♦ 6.5k
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5 follow
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Count the number of homozygous and heterozygous variants in VCF file
1000genomes allele awk count written 11 weeks ago by aadhirareddy1323 • 20
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1000Genomes population allele frequencies for list of SNPs
1000genomes snps written 10 weeks ago by sonia.olaechea • 50 • updated 10 weeks ago by Pierre Lindenbaum ♦ 116k
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Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 20 months ago by eurioste • 20 • updated 4 months ago by zx8754 ♦ 6.5k
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How to find rs numbers from Coriell ID
1000genomes rs numbers dbsnp coriell id written 7 months ago by kspata • 40
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1000 Genomes and ESP Populations in Exome Aggregation Consortium Data
1000genomes esp exac evs 1000 genomes written 4.3 years ago by Vivek • 2.2k • updated 7 months ago by Biostar ♦♦ 20
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Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
maf 1000genomes exac snp sequencing written 8 months ago by gaelgarcia05 • 180
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Discrepencies between ANNOVAR and Gencode annotations of 1000 genomes
1000genomes snp annotation written 16 months ago by spiral01 • 80 • updated 14 months ago by Biostar ♦♦ 20
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comparison of exome data to the 1000Genomes WGS data
exome 1000genomes plink snp written 15 months ago by gabili • 0 • updated 15 months ago by trausch • 1.2k
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Finding SNPs in 1000genomes populations
1000genomes gwas written 15 months ago by andrew.ghaiyed • 0
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Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
1000genomes tabix faidx samtools vcftools written 16 months ago by shrutishreyajha • 0
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Slicing a vcf file to just a few thousand SNPs with PyVCF.
vcf python 1000genomes written 21 months ago by Pedro Morell • 10 • updated 21 months ago by Pierre Lindenbaum ♦ 116k
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POS Length of 1000 genomes VCF
vcf 1000genomes vcftools written 23 months ago by sebastianvencken • 0 • updated 23 months ago by Mitch Bekritsky • 1.1k
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Missing Snp Variants In Two 10Mb Blocks On Chr1 And Chr9 In 1000 Genome Data?
1000genomes variant snp written 4.9 years ago by Zhenyu Zhang • 240 • updated 23 months ago by Biostar ♦♦ 20
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Vcf-Consensus For Individuals From 1000 Genomes
1000genomes written 5.3 years ago by sophix • 20 • updated 24 months ago by rajesh.msch • 0
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1000 genomes, meaning of the color of pie charts for population genetic
1000genomes snp population genetics written 2.2 years ago by bzhtgb • 10 • updated 2.2 years ago by Biostar ♦♦ 20
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Tool: bed_to_tabix: Download the variants from 1,000 Genomes in the regions defined in one or more BED files.
cli python 1000genomes tool linux written 2.2 years ago by Juan Manuel Berros • 80
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How to use the 1000Genomes data (hapmap data) to select tag-SNPs in HaploView?
hapmap 1000genomes snp written 2.5 years ago by psycolt2011 • 0 • updated 2.4 years ago by Biostar ♦♦ 20
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Changing to ancestral/derived states using vcftools
vcf 1000genomes written 2.4 years ago by GabrielMontenegro • 500
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1.8k
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Filter VCF by sample?
1000genomes vcftools written 2.5 years ago by cmdcolin • 1.1k • updated 2.4 years ago by trausch • 1.2k
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BWA: Importing a third-party indexed genome
1000genomes alignment grch38 bwa written 2.5 years ago by GD • 30
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Difference between evidence only and evidence support?
genome 1000genomes bam alignment sequencing written 2.6 years ago by severalorks • 90
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Using VCFtools to obtain fasta files
genome fasta vcf vcftools 1000genomes written 2.6 years ago by severalorks • 90
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Using VCFtools to find which population codes individuals in a vcf file belong to
vcf 1000genomes vcftools population-code written 2.6 years ago by severalorks • 90 • updated 2.6 years ago by Vincent Laufer • 1.0k
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how to find the haplotype info in population genomic databases
1000genomes haplotype exac written 2.6 years ago by CrazyB • 200 • updated 2.6 years ago by Denise - Open Targets • 4.7k
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5 follow
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Retrieve Single Vcf From List Of Snp Rs#
vcf 1000genomes tabix written 6.1 years ago by Peixe • 580 • updated 2.6 years ago by Scott • 80
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7
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25 follow
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Forum: A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes forum selection human written 5.0 years ago by Giovanni M Dall'Olio ♦ 26k • updated 2.6 years ago by mwhart • 0
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Coverage/Read Depth per SNP in 1000Genomes
1000genomes coverage snp written 2.8 years ago by Floris Brenk • 870 • updated 2.8 years ago by lh3 ♦ 31k
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