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3
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Any fast way to download 1000 Genome Phase 3?
1000genomes aspera fasp written 8 days ago by b.ambrozio • 0
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64
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Any practical example/tutorial on how to simulate phenotypes from 1000 Genomes?
1000genomes gcta written 9 days ago by b.ambrozio • 0
9
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4.8k
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10 follow
1
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Annovar Annotation With 1000G
annovar 1000genomes written 6.8 years ago by daphnarisseeuw • 30 • updated 3 months ago by biotefarosero • 0
2
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1
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184
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1
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Access 1000 Genomes non-imputed data set
vcf 1000genomes written 4 months ago by aadhirareddy1323 • 30
2
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1
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142
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1
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Missing variants in hg38 lift-over of 1000-genomes data
vcf 1000genomes written 4 months ago by gokberk • 60
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183
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Extracting super-population allele frequencies from 1000 genomes (phase 3) data
vcf 1000genomes written 4 months ago by gokberk • 60
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275
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0
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BCFTools Query: Avoid grouping Alt Alleles
vcf 1000genomes bcftools annotation written 6 months ago by jon.klonowski • 40
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267
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0
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Mate mismatch errors in 1000genomes CRAM files
validatesam 1000genomes fixmate matepairs cram written 10 months ago by Mehulsharma.253 • 10
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6 follow
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Extract SNPs and SNP ID's from vcf file
vcf 1000genomes snps extract written 2.0 years ago by aadhirareddy1323 • 30 • updated 11 months ago by zx8754 ♦ 8.4k
3
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1
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1.8k
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1
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How to extract SNPs from vcf file based on Population
vcf 1000genomes linux written 22 months ago by aadhirareddy1323 • 30 • updated 11 months ago by zx8754 ♦ 8.4k
3
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2
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1.0k
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5 follow
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Count the number of homozygous and heterozygous variants in VCF file
1000genomes allele awk count written 11 months ago by aadhirareddy1323 • 30
10
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2
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1.1k
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7 follow
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1000Genomes population allele frequencies for list of SNPs
1000genomes snps written 11 months ago by sonia.olaechea • 100 • updated 11 months ago by Pierre Lindenbaum ♦ 124k
6
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1
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8 follow
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Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 2.4 years ago by eurioste • 20 • updated 14 months ago by zx8754 ♦ 8.4k
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How to find rs numbers from Coriell ID
1000genomes rs numbers dbsnp coriell id written 16 months ago by kspata • 60
2
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1
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3.4k
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1
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1000 Genomes and ESP Populations in Exome Aggregation Consortium Data
1000genomes esp exac evs 1000 genomes written 5.0 years ago by Vivek • 2.3k • updated 17 months ago by Biostar ♦♦ 20
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0
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751
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Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
maf 1000genomes exac snp sequencing written 17 months ago by gaelgarcia05 • 190
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Discrepencies between ANNOVAR and Gencode annotations of 1000 genomes
1000genomes snp annotation written 2.1 years ago by spiral01 • 100 • updated 23 months ago by Biostar ♦♦ 20
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1.1k
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0
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comparison of exome data to the 1000Genomes WGS data
exome 1000genomes plink snp written 2.0 years ago by gabili • 0 • updated 2.0 years ago by trausch • 1.4k
0
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1
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736
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1
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Finding SNPs in 1000genomes populations
1000genomes gwas written 2.0 years ago by andrew.ghaiyed • 0
0
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0
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820
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0
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Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
1000genomes tabix faidx samtools vcftools written 2.1 years ago by shrutishreyajha • 0
3
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1
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1.0k
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1
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Slicing a vcf file to just a few thousand SNPs with PyVCF.
vcf python 1000genomes written 2.5 years ago by Pedro Morell • 10 • updated 2.5 years ago by Pierre Lindenbaum ♦ 124k
0
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2
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754
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2
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POS Length of 1000 genomes VCF
vcf 1000genomes vcftools written 2.7 years ago by sebastianvencken • 0 • updated 2.7 years ago by Mitch Bekritsky • 1.2k
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1
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1.5k
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1
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Missing Snp Variants In Two 10Mb Blocks On Chr1 And Chr9 In 1000 Genome Data?
1000genomes variant snp written 5.6 years ago by Zhenyu Zhang • 260 • updated 2.7 years ago by Biostar ♦♦ 20
2
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1
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3.3k
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5 follow
1
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Vcf-Consensus For Individuals From 1000 Genomes
1000genomes written 6.0 years ago by sophix • 20 • updated 2.7 years ago by rajesh.msch • 0
0
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895
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1000 genomes, meaning of the color of pie charts for population genetic
1000genomes snp population genetics written 3.0 years ago by bzhtgb • 10 • updated 3.0 years ago by Biostar ♦♦ 20
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Tool: bed_to_tabix: Download the variants from 1,000 Genomes in the regions defined in one or more BED files.
cli python 1000genomes tool linux written 3.0 years ago by Juan Manuel Berros • 80
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How to use the 1000Genomes data (hapmap data) to select tag-SNPs in HaploView?
hapmap 1000genomes snp written 3.3 years ago by psycolt2011 • 0 • updated 3.1 years ago by Biostar ♦♦ 20
0
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1.6k
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0
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Changing to ancestral/derived states using vcftools
vcf 1000genomes written 3.2 years ago by GabrielMontenegro • 540
4
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1
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2.3k
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1
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Filter VCF by sample?
1000genomes vcftools written 3.2 years ago by cmdcolin • 1.3k • updated 3.2 years ago by trausch • 1.4k
2
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0
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928
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0
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BWA: Importing a third-party indexed genome
1000genomes alignment grch38 bwa written 3.3 years ago by GD • 30
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