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12
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2
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1.5k
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8 follow
2
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1000Genomes population allele frequencies for list of SNPs
1000genomes snps written 16 months ago by sonia.olaechea • 100 • updated 9 weeks ago by Biostar ♦♦ 20
0
votes
0
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137
views
0
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1000 Genomes phase 3 sample numbers do not add up
genome 1000genomes vcf population written 4 months ago by florin.ratajczak • 0
3
votes
1
answer
211
views
1
answer
Any fast way to download 1000 Genome Phase 3?
1000genomes aspera fasp written 4 months ago by b.ambrozio • 20
0
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0
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157
views
0
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Any practical example/tutorial on how to simulate phenotypes from 1000 Genomes?
1000genomes gcta written 5 months ago by b.ambrozio • 20
9
votes
1
answer
5.0k
views
10 follow
1
answer
Annovar Annotation With 1000G
annovar 1000genomes written 7.2 years ago by daphnarisseeuw • 30 • updated 7 months ago by biotefarosero • 0
2
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1
answer
255
views
1
answer
Access 1000 Genomes non-imputed data set
vcf 1000genomes written 9 months ago by aadhirareddy1323 • 30
2
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1
answer
208
views
1
answer
Missing variants in hg38 lift-over of 1000-genomes data
vcf 1000genomes written 9 months ago by gokberk • 60
4
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0
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257
views
0
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Extracting super-population allele frequencies from 1000 genomes (phase 3) data
vcf 1000genomes written 9 months ago by gokberk • 60
0
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0
answers
359
views
0
answers
BCFTools Query: Avoid grouping Alt Alleles
vcf 1000genomes bcftools annotation written 11 months ago by jon.klonowski • 70
0
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0
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330
views
0
answers
Mate mismatch errors in 1000genomes CRAM files
validatesam 1000genomes fixmate matepairs cram written 15 months ago by Mehulsharma.253 • 10
3
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0
answers
1.7k
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6 follow
0
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Extract SNPs and SNP ID's from vcf file
vcf 1000genomes snps extract written 2.4 years ago by aadhirareddy1323 • 30 • updated 15 months ago by zx8754 ♦ 9.1k
3
votes
1
answer
2.2k
views
1
answer
How to extract SNPs from vcf file based on Population
vcf 1000genomes linux written 2.2 years ago by aadhirareddy1323 • 30 • updated 15 months ago by zx8754 ♦ 9.1k
3
votes
2
answers
1.3k
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5 follow
2
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Count the number of homozygous and heterozygous variants in VCF file
1000genomes allele awk count written 16 months ago by aadhirareddy1323 • 30
6
votes
1
answer
1.9k
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8 follow
1
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Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 2.8 years ago by eurioste • 20 • updated 18 months ago by zx8754 ♦ 9.1k
1
vote
0
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948
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0
answers
How to find rs numbers from Coriell ID
1000genomes rs numbers dbsnp coriell id written 21 months ago by kspata • 70
2
votes
1
answer
3.6k
views
1
answer
1000 Genomes and ESP Populations in Exome Aggregation Consortium Data
1000genomes esp exac evs 1000 genomes written 5.4 years ago by Vivek • 2.4k • updated 21 months ago by Biostar ♦♦ 20
4
votes
0
answers
908
views
0
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Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
maf 1000genomes exac snp sequencing written 22 months ago by gaelgarcia05 • 200
1
vote
0
answers
857
views
0
answers
Discrepencies between ANNOVAR and Gencode annotations of 1000 genomes
1000genomes snp annotation written 2.5 years ago by spiral01 • 100 • updated 2.3 years ago by Biostar ♦♦ 20
0
votes
0
answers
1.2k
views
0
answers
comparison of exome data to the 1000Genomes WGS data
exome 1000genomes plink snp written 2.4 years ago by gabili • 0 • updated 2.4 years ago by trausch • 1.4k
0
votes
1
answer
817
views
1
answer
Finding SNPs in 1000genomes populations
1000genomes gwas written 2.4 years ago by andrew.ghaiyed • 0
0
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0
answers
918
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0
answers
Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
1000genomes tabix faidx samtools vcftools written 2.5 years ago by shrutishreyajha • 0
3
votes
1
answer
1.1k
views
1
answer
Slicing a vcf file to just a few thousand SNPs with PyVCF.
vcf python 1000genomes written 2.9 years ago by Pedro Morell • 10 • updated 2.9 years ago by Pierre Lindenbaum ♦ 127k
0
votes
2
answers
813
views
2
answers
POS Length of 1000 genomes VCF
vcf 1000genomes vcftools written 3.1 years ago by sebastianvencken • 0 • updated 3.1 years ago by Mitch Bekritsky • 1.2k
0
votes
1
answer
1.5k
views
1
answer
Missing Snp Variants In Two 10Mb Blocks On Chr1 And Chr9 In 1000 Genome Data?
1000genomes variant snp written 6.0 years ago by Zhenyu Zhang • 260 • updated 3.1 years ago by Biostar ♦♦ 20
2
votes
1
answer
3.4k
views
5 follow
1
answer
Vcf-Consensus For Individuals From 1000 Genomes
1000genomes written 6.4 years ago by sophix • 20 • updated 3.1 years ago by rajesh.msch • 0
0
votes
0
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950
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0
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1000 genomes, meaning of the color of pie charts for population genetic
1000genomes snp population genetics written 3.4 years ago by bzhtgb • 10 • updated 3.3 years ago by Biostar ♦♦ 20
1
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0
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1.4k
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0
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Tool: bed_to_tabix: Download the variants from 1,000 Genomes in the regions defined in one or more BED files.
cli python 1000genomes tool linux written 3.4 years ago by Juan Manuel Berros • 80
0
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0
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1.3k
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0
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How to use the 1000Genomes data (hapmap data) to select tag-SNPs in HaploView?
hapmap 1000genomes snp written 3.7 years ago by psycolt2011 • 0 • updated 3.5 years ago by Biostar ♦♦ 20
0
votes
0
answers
1.8k
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0
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Changing to ancestral/derived states using vcftools
vcf 1000genomes written 3.5 years ago by GabrielMontenegro • 540
5
votes
1
answer
2.5k
views
1
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Filter VCF by sample?
1000genomes vcftools written 3.6 years ago by cmdcolin • 1.3k • updated 3.6 years ago by trausch • 1.4k
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