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23 results • Page
1 of 1
Sort: replies
Rank
Views
Votes
Replies
1
vote
14
replies
593
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast
ncbi
4 hours ago by
hophuquy0944
• 0
0
votes
4
replies
200
views
Merge clusters in Seurat UMAP
seurat
umap
1 hour ago by
kilcdincer
▴ 10
0
votes
3
replies
190
views
Sam file Header problem
Sam
Header
problem
file
updated 2 hours ago by
Pierre Lindenbaum
161k • written 1 day ago by
saifulislam99121
• 0
1
vote
2
replies
222
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart
RNAseq
kallisto
18 hours ago by
bioinfo
▴ 150
0
votes
2
replies
97
views
How to generate table_annovar from VCF input?
vcf
annovar
updated 2 hours ago by
Pierre Lindenbaum
161k • written 8 hours ago by
melissachua90
▴ 70
0
votes
2
replies
163
views
perseus software (version 1.5.5)
preseus
mass
spectrometry
data
updated 22 hours ago by
DGTool
▴ 20 • written 2 days ago by
iqra
• 0
2
votes
2
replies
166
views
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
single-cell
ambient-RNA
updated 13 hours ago by
Ram
43k • written 16 hours ago by
txema.heredia
▴ 130
0
votes
1
reply
133
views
Add line under stat test
stats
R
updated 6 hours ago by
Nyksubuz
▴ 20 • written 1 day ago by
Ghada
• 0
0
votes
1
reply
146
views
Difference in number of reads when using duplex and simplex base calling with Dorado
base
calling
nanopore
simplex
dorado
duplex
updated 19 hours ago by
GenoMax
142k • written 1 day ago by
Lélé
▴ 10
0
votes
1
reply
144
views
Seurat v5 and how to correctly integrate across multiple experiments
Seurat
scRNA
R
updated 22 hours ago by
Papyrus
★ 2.9k • written 1 day ago by
yura.grabovska
▴ 90
1
vote
1
reply
184
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 14 hours ago by
Jordan M Eizenga
▴ 460 • written 11 days ago by
sarumonsus
▴ 10
0
votes
1
reply
117
views
How can I calculate the OS of each patient?
overall-survival
updated 18 hours ago by
ATpoint
82k • written 19 hours ago by
Pedro
• 0
1
vote
1
reply
121
views
API kegg - IndexError: list index out of range
kegg
API
updated 6 hours ago by
Nyksubuz
▴ 20 • written 1 day ago by
mirwa.zidi93
• 0
0
votes
1
reply
117
views
BiomartException: Query ERROR for existing dataset in BioMart
biomart
ensembl
wheat
python
pybiomart
updated 4 hours ago by
Nyksubuz
▴ 20 • written 1 day ago by
Luqman
• 0
0
votes
0
replies
8
views
zero TPM for many gene including housekeeping when using kallisto
RNAseq
9 minutes ago by
ashkan
▴ 160
0
votes
0
replies
72
views
cat-bgen fail
bgenix
updated 19 hours ago by
Ram
43k • written 19 hours ago by
lambard
• 0
0
votes
0
replies
71
views
Error when running create-maf-vcf at convertGVCFToHVCFForChrom step - PHGv2
PHG
pangenome
PHG_v2
18 hours ago by
Jsarria.EEAD
• 0
0
votes
0
replies
65
views
Use of ichor CNA
Dog
CNA
genome
15 hours ago by
sainavyav22
• 0
0
votes
0
replies
59
views
Help! Reconstruction of locus, order contigs
contigs
cluster
alignment
locus
10 hours ago by
BATMAN
• 0
0
votes
0
replies
61
views
Help interpreting KEGG module definitions for converting to NetworkX graph
definition
kegg
module
database
genomics
10 hours ago by
O.rka
▴ 720
0
votes
0
replies
36
views
How do I quantify the non-coding transcripts that I have generated after using CPAT,PLEK, and BLAST altogether?
transcript
Quantify
non-coding
3 hours ago by
Varsha
• 0
0
votes
0
replies
12
views
What marks a De-Novo Genome assembly as FAILED?
nanopore
denovo
illumina
assembly
genome
34 minutes ago by
Umer
▴ 50
0
votes
0
replies
9
views
constructing pangenome through psvcp
psvcp
pangenome
14 minutes ago by
analyst
▴ 50
23 results • Page
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Recent Votes
Answer: Generating consensus sequence from bam file
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Comment: API kegg - IndexError: list index out of range
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Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
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Recent Replies
Answer: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input?
by
Pierre Lindenbaum
161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem
by
Pierre Lindenbaum
161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
DGTool
▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
b.contreras.moreira
▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input?
by
LucisTheFather
• 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
thank you
Comment: How to extract cells of different species after mapping with combined genome?
by
Tony
• 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Nyksubuz
▴ 20
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test
by
Nyksubuz
▴ 20
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range
by
Nyksubuz
▴ 20
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem
by
saifulislam99121
• 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
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