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<prev • 6,674 results • page 1 of 223 • next >
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How to plot GSEA result?
fgsea gsea plot plotenrichment R written 11 hours ago by Raheleh • 100 • updated 4 hours ago by Kevin Blighe ♦ 51k
3
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222
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Load Count Matrix
R written 4 months ago by Bios • 10 • updated 5 hours ago by Biostar ♦♦ 20
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1
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11 follow
1
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Gene Lists Using Principal Component Analysis In Microarray Gene Expression
R pca microarray written 8.1 years ago by Tonig • 440 • updated 23 hours ago by Biostar ♦♦ 20
4
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1
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415
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1
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sva combat removes wanted biological variation
R sva combat rna-seq pca written 9 months ago by exin • 50 • updated 1 day ago by Biostar ♦♦ 20
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1
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146
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1
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subsetting out cells from seurat object based on expression of 1 gene
R seurat written 19 days ago by cook.675 • 10 • updated 2 days ago by jared.andrews07 • 3.9k
3
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159
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How to find upregulated and downregulated genes for my microarray data with limma
R next-gen chip-seq microarray rna-seq written 2 days ago by koushik.vf09 • 10 • updated 2 days ago by Kevin Blighe ♦ 51k
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50
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Invalid covariate name
R ballgown rna-seq written 2 days ago by mark.pekarsky • 10
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0
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57
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how to draw customizing chromosome plot
genome R snp written 2 days ago by mmh7272 • 50
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1
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59
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1
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DNAcopy plot error
R cnv analysis next-gen sequencing written 2 days ago by sunilpachakar • 0 • updated 2 days ago by genomax ♦ 74k
10
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2
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157
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2
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Add metadata based on tree structure
R ggtree written 19 days ago by Jack • 40
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4
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4
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any tool or R package for integrated analysis of miRNA and mRNA expression data ??
R ngs microarray rna-seq written 4.2 years ago by unique379 • 70 • updated 2 days ago by kristoffer.vittingseerup • 2.6k
3
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1
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94
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1
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Getting RNA expression from TCGA only for these patients IDs
R tcga rna-seq written 3 days ago by A • 3.6k
6
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3
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73
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3
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Using ColSums vs sizeFactors in read count normalization
R fpkm deseq2 rna-seq written 3 days ago by tpaboh • 0
1
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1
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98
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1
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Creating a score for gene-ontology representation
R scaling rna-seq normalisation written 4 days ago by n.anuragsharma • 10 • updated 3 days ago by Jean-Karim Heriche ♦ 21k
3
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1
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83
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1
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Run R script on 100 files using for loop
R written 3 days ago by haneenih7 • 50
2
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1
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110
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1
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GSVA and SSGSEA for RNA-Seq TPM data
R gsva rna-seq written 5 days ago by ugurcabuk • 20 • updated 4 days ago by Kevin Blighe ♦ 51k
9
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2
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154
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2
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Extract sequences consecutively from a large fasta files and save in new fasta files
perl python R shell fasta written 6 days ago by Dineshkumar K • 30 • updated 4 days ago by Chirag Parsania • 1.7k
16
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4
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183
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5 follow
4
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Interpretation of RNA seq pipeline in a paper
R rna-seq edger written 4 days ago by n.anuragsharma • 10 • updated 4 days ago by colin.kern • 690
1
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148
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Always evaluate non-experimental chip effects correction (batch effects)??
R gene expression microarray written 9 weeks ago by Leite • 890 • updated 4 days ago by Biostar ♦♦ 20
4
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75
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Fisher's exact test for Copy Number Variation association in R
gene R snp software error genome written 4 days ago by taghizadehkobra • 0
0
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1
answer
55
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1
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How to calculate gene expression level from BW and BED file
R rna-seq written 5 days ago by wmei1997 • 0 • updated 5 days ago by Amar • 440
1
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48
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Add error bars to barplot that uses melted dataframe in R
R ggplot2 ddct qpcr written 5 days ago by j.lunger18 • 10
5
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1
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132
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1
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R: Collapsed to unique genes (Affymetrix microarray)
R microarray affymetrix written 6 days ago by Joe Kherery • 80
0
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0
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521
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Haplotypic diversity with pegas package error
phylogeny R genomic haplotypic diversity written 19 months ago by mimi • 20 • updated 5 days ago by mernster • 0
0
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2
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116
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2
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[diffbind] error when running dba.count
R chip-seq written 11 days ago by Kathy • 0
1
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1
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84
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1
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Plotting - Coverage Analysyis
R sequencing python coverage plot written 6 days ago by Gene • 10 • updated 5 days ago by zx8754 ♦ 8.4k
4
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2
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110
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2
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Can't find output after featureCounts
R rna-seq written 10 days ago by ovariohisterectomia • 0 • updated 6 days ago by zx8754 ♦ 8.4k
1
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2
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83
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2
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Copy number profile using VarScan
varscan cnv_graph cnvs R written 6 days ago by tanbiswas6 • 0
2
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1
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47
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1
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For CreateSeuratObject, Where Do the Values for min.cells and min.features come from?
R seurat sc-rna-seq written 6 days ago by bioinformatics2020 • 0 • updated 6 days ago by jared.andrews07 • 3.9k
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News: scRNA-seq data analysis course in Berlin
R news rna scrnaseq rna-seq written 6 days ago by carlopecoraro2 • 1.2k
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