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3
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72
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5 follow
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To generate an scRNA counts file using barcodes.tsv, genes.tsv and matrix.mtx file
R rna-seq written 9 hours ago by janejoythomas • 0 • updated 8 hours ago by piyushjo • 150
4
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2
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109
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2
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Meaningful DE using rpkm values in a RNA-Seq analysis
R sequencing chip-seq rna-seq assembly written 1 day ago by Seq225 • 90 • updated 17 hours ago by c.chakraborty • 140
7
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2
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98
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2
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix written 19 hours ago by mohammedtoufiq91 • 50 • updated 18 hours ago by zx8754 ♦ 7.9k
0
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0
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64
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Job: Bioinformatics Analyst II, Genomics Shared Resource - Fred Hutchinson Cancer Research Center, Seattle, WA
bioinformatics python job genomics R written 1 day ago by Fred Hutch (Recruiting) • 0
0
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0
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71
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0
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Namespace dependency not required limma
R bioconductor limma written 1 day ago by Dylan Wang • 40 • updated 1 day ago by RamRS ♦ 23k
1
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60
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Support for import of custom matrix data in the ddCt R package
R analysis ddct import qrtpcr written 1 day ago by mohammedtoufiq91 • 50
0
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0
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93
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0
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Zero-inflated negative binomial distribution in R
R zero-inflated negative binomial written 7 days ago by ma23 • 20
0
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1
answer
92
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1
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changing species names in phylogeny in R
R phylogenetics written 3 days ago by phylofun • 30 • updated 2 days ago by Brice Sarver • 2.8k
0
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0
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51
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0
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Sample grouping (phenoData) and visualization in R package- HtqPCR
R htqpcr visualization phenodata grouping written 2 days ago by mohammedtoufiq91 • 50
0
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0
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62
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0
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Kegg result interpretation
gene R statistic rna-seq written 2 days ago by Heinrich_M • 0
1
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2
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1.3k
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2
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how to get information for a series of accession ID ?
R linux unix python written 4.4 years ago by Mo • 890 • updated 2 days ago by taserope • 0
2
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0
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42
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0
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News: R/Bioconductor for Mass Spectrometry and Proteomics course in Berlin
proteomics R bioconductor news bioinformatics written 2 days ago by carlopecoraro2 • 1.2k
2
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0
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48
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News: Introduction to RMarkdown
R news written 2 days ago by carlopecoraro2 • 1.2k
0
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1
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100
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1
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karyoploteR: black, gray and red shades in ideogram
genome R karyoploter written 5 days ago by guinevere.q.lee • 0 • updated 2 days ago by Buffo • 1.6k
6
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1
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137
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5 follow
1
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Confusion with fold change cutoff
R rna-seq written 3 days ago by banerjeeshayantan • 130 • updated 3 days ago by ATpoint ♦ 21k
0
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0
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98
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0
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WGCNA blockwiseModules() output too small modules
wgcna rna-seq R written 4 days ago by lillo_dicarlo • 0
1
vote
2
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111
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2
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how to caculate effective length for RNA sequencing?
R rna-seq written 5 weeks ago by xiaoguang • 10 • updated 4 days ago by Gordon Smyth • 950
2
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0
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106
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0
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Forum: What are the thesis topics I can choose for personalized medicine in relation to NAFLD (non- alcoholic fatty liver disease) or Cardiovascular disease or Aging?
genome R forum next-gen rna-seq written 5 days ago by koushikayaluri • 20 • updated 5 days ago by h.mon ♦ 27k
5
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2
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86
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2
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Get a bunch of ENTREZID into gene symbols
gene R rna-seq written 5 days ago by qicaibiology • 10 • updated 5 days ago by piyushjo • 150
0
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0
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1.3k
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0
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Determining ploidy via read ratios with HaplotypeCaller: skewed results?
gatk ploidy illumina snp R written 2.8 years ago by mmats010 • 60 • updated 5 days ago by Biostar ♦♦ 20
0
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0
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107
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How to use WhichCells Function to label clusters
R seurat written 12 days ago by world • 0
0
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0
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290
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0
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How to use monocle to import a loom file?
R monocle rna-seq seurat written 5 months ago by yuhongruoyi • 10 • updated 6 days ago by Biostar ♦♦ 20
0
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1
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72
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1
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Comparing RNAseq to proteomics data, coding help?
proteomics R correlation rna-seq written 6 days ago by skoren • 0
2
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1
answer
74
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1
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understanding the data from the ucsc table browser
gene genome introns genome browser R written 7 days ago by a4appy23 • 10
0
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0
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65
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R: Iteratively name output of vectorised function
R written 7 days ago by miles.thorburn • 80
0
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0
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54
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0
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Tool: R pakcage: ALPS - AnaLysis routines for ePigenomicS data
dataviz R epigenomics tool written 7 days ago by venu ♦ 6.2k
0
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2
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115
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2
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Label Clusters in Seurat
R seurat rna-seq written 8 days ago by planetearth • 0 • updated 7 days ago by ApoorvaB • 230
0
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0
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42
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0
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AnnotationDbi: merge database and GO terms
R bioconductor go enrichment databases written 7 days ago by trueflyingsheep • 0
0
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1
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67
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1
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plotTracks - empty plot and custom genomes
R gviz written 7 days ago by agata88 • 790 • updated 7 days ago by benformatics • 1.1k
0
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0
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57
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0
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CNV detection in mRNA , SNP array using R
R written 7 days ago by Begali • 0
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