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How to convert 10X single nuclear RNA Seq bam file to fastq?
bamtofastq 10x genomics cellranger snrna written 9 days ago by Researcher • 50
1
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1
answer
78
views
1
answer
Where to find reference transcriptome for firefly?
scrna-seq alignment cellranger transcriptome written 24 days ago by jrleary • 110 • updated 24 days ago by genomax ♦ 83k
2
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0
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76
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Should I aggregate expression matrices from cell hashed and non-hashed libraries with cellranger?
scrna-seq 10x cellranger rna-seq written 6 weeks ago by massonix • 20
2
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1
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96
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1
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Cellranger Reanalyze NO barcode rank plot in web_summary.html
warning reanalyze scrna cellranger written 6 weeks ago by el24 • 10 • updated 6 weeks ago by swbarnes2 ♦ 7.8k
3
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2
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186
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6 follow
2
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CellRanger scRNA .mtx only uses 15% of reads in .bam?
.bam .mtx scrna cellranger single cell written 8 weeks ago by Diedes • 20 • updated 7 weeks ago by i.sudbery ♦ 7.7k
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Unable to convert single cell RNA Seq bam to fastq using cellranger's bamtofastq
single cell cellranger single cell rna seq written 10 weeks ago by Researcher • 50
0
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0
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171
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How to find percentage of a gene (eg.Ppbp) for condition A and condition B from 10X Single Cell RNAseq?
rnaseq 10x single cell cellranger written 5 months ago by bioinforesearchquestions • 280 • updated 5 months ago by Biostar ♦♦ 20
2
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1
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375
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1
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CellRanger Make Counts Expected Cells
cellranger written 5 months ago by bioinformatics2020 • 130
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1
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302
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1
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Can cell ranger count take a folder of only .fastq.gz as input?
cellranger scrnaseq written 6 months ago by jrleary • 110 • updated 6 months ago by swbarnes2 ♦ 7.8k
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1.2k
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7 follow
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about the use of CellRanger aggr
scrna-seq cellranger written 10 months ago by Bogdan • 1000
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