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<prev • 25 results • page 1 of 1 • next >
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CellRanger with CITE-seq and hashing
cite-seq hashing cellranger 10x genomics written 15 days ago by lic4010 • 0
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Single-cell RNA-seq coverage track not corresponding to gene structure
scrnaseq cellranger written 17 days ago by Eugene A • 80 • updated 17 days ago by rpolicastro • 2.3k
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scRNA: subset a small number of fastq reads
10x fastq scrna cellranger written 19 days ago by bsmith030465 • 150
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Cellranger output .bam file does Not contain barcodes ( CB and UB )
velocyto umi barcodes chromium10x cellranger written 26 days ago by Gabriel • 80
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Any alternatives to Cellranger aligner that Seurat can read?
scrna-seq rna-seq cellranger sequencing written 4 weeks ago by louis-gil • 0 • updated 4 weeks ago by ATpoint ♦ 42k
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cellranger: min gene count and UMI/cell filter?
scrna-seq qc cellranger 10x genomics written 5 weeks ago by mcsimenc • 10 • updated 5 weeks ago by swbarnes2 ♦ 9.2k
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From 10x single cell data to a bulk analysis
singlecell 10x dna-seq copy number cellranger written 10 weeks ago by noshadho • 10
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Cellranger: BCR analysis
bcr scrna cellranger written 3 months ago by bsmith030465 • 150 • updated 3 months ago by tiago211287 • 1.2k
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Cellranger 4.0.0 Installation Trouble
10xgenomics cellranger written 3 months ago by Ethidium Bromide • 0
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Cellranger cnv analysis bin size
singlecell cellranger_dna cellranger cnv written 3 months ago by noshadho • 10
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Rule in snakemake using singularity: unterminated quoted string
singularity snakemake cellranger docker written 4 months ago by compuTE • 50
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Filtering out mouse cells based on mouse/human genes ratio
10x rna-seq scrnaseq cellranger written 4 months ago by biostarukha • 10
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10x Cell Ranger 'count' function error:
10x cellranger single cell written 5 months ago by miyagi • 0
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Programmatically kicking off cellranger based on fastq folder format
10x scrna-seq fastq cellranger written 5 months ago by Vincent Laufer • 1.1k
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How to remove non protein coding genes from single cell pre-mRNA seq?
scrna rna-seq cellranger written 5 months ago by biostarukha • 10 • updated 5 months ago by caggtaagtat • 1.3k
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How to convert 10X single nuclear RNA Seq bam file to fastq?
bamtofastq 10x genomics cellranger snrna written 6 months ago by Researcher • 60
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Where to find reference transcriptome for firefly?
scrna-seq alignment cellranger transcriptome written 6 months ago by jrleary • 130 • updated 6 months ago by genomax ♦ 92k
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Should I aggregate expression matrices from cell hashed and non-hashed libraries with cellranger?
scrna-seq 10x cellranger rna-seq written 7 months ago by massonix • 20
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Cellranger Reanalyze NO barcode rank plot in web_summary.html
warning reanalyze scrna cellranger written 7 months ago by el24 • 10 • updated 7 months ago by swbarnes2 ♦ 9.2k
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CellRanger scRNA .mtx only uses 15% of reads in .bam?
.bam .mtx scrna cellranger single cell written 7 months ago by Diedes • 20 • updated 7 months ago by i.sudbery ♦ 9.7k
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Unable to convert single cell RNA Seq bam to fastq using cellranger's bamtofastq
single cell cellranger single cell rna seq written 8 months ago by Researcher • 60
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How to find percentage of a gene (eg.Ppbp) for condition A and condition B from 10X Single Cell RNAseq?
rnaseq 10x single cell cellranger written 11 months ago by bioinforesearchquestions • 280 • updated 11 months ago by Biostar ♦♦ 20
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CellRanger Make Counts Expected Cells
cellranger written 11 months ago by bioinformatics2020 • 520
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Can cell ranger count take a folder of only .fastq.gz as input?
cellranger scrnaseq written 12 months ago by jrleary • 130 • updated 12 months ago by swbarnes2 ♦ 9.2k
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about the use of CellRanger aggr
scrna-seq cellranger written 16 months ago by Bogdan • 1.1k
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