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Imputation of chromosome X using the Michigan imputation server

imputation genotypes chrx written 19 months ago by Floris Brenk • 860 • updated 16 months ago by chariko • 30

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BWA on pseudo-autosomic regions

variant calling alignment bwa chrx chry written 2.2 years ago by merella.stefania • 10

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Recent Replies

C: Error in get(cdfname, object 'mm430mmentrezgcdf' not found by Santosh Anand • 4.1k
I've the feeling that there is some issue with the names. You may check these things: 1. what do...
C: Error in get(cdfname, object 'mm430mmentrezgcdf' not found by Walter Jessen • 80
Thanks for catching the version error Santosh. Deleted, built and installed from source the 10.0 ...
C: K-means With Many Clusters: Quick-TRANSfer steps exceeded by Santosh Anand • 4.1k
check also https://stackoverflow.com/questions/21382681/kmeans-quick-transfer-stage-steps-exceede...
C: bash & quickGO to download gene symbols of a GO term by Adrian Pelin • 2.2k
Yeah I noticed that. The problem is that it's not supposed to open as a webpage but rather as a t...
C: CpG islands for ARS-UCD1.2 Bos taurus genome? by dango147 • 0
Thanks vkkodali, that was helpful. I'll also write to the helpdesk
C: No mismatch allowed setting in Bowtie2 (-N 0 does not help) by Santosh Anand • 4.1k
MAX, MIN is for penalty according to Quality of base. You may set both to same and a very high nu...
C: bash & quickGO to download gene symbols of a GO term by genomax ♦ 58k
There is definitely output in a web page (just try the URL standalone `http://www.ebi.ac.uk/Quick...
A: K-means With Many Clusters: Quick-TRANSfer steps exceeded by Ark • 60
I have been working with this some more and have come to the conclusion that this particular warn...
C: No mismatch allowed setting in Bowtie2 (-N 0 does not help) by Ankit • 30
It seems MAX,MIN is only shown in manual (`--mp MX,MN`). The downloaded bowtie2 version I have i...
C: DESeq2 and P values by Santosh Anand • 4.1k
Can you confirm you are plotting the raw pValue, and not the adjusted one (Padj)?
C: scRNA-seq, SEURAT, NormalizeData, ScaleData, PCA, CCA ... by igor ♦ 7.0k
I guess I (and the Seurat tutorial) did not explicitly mention the primary objective. Yes, the sc...
C: No mismatch allowed setting in Bowtie2 (-N 0 does not help) by Ankit • 30
Thanks for the reply. Mismatch penalty has MAX,MIN values. If I set MAX as 10000, what should be...

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