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<prev • 567 results • page 1 of 19 • next >
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What are the best tools/practices for CNV (structural variation) detection/analysis for Illumina family data?
sv wgs snp array wes cnv written 19 months ago by Irina Astrovskaya • 20 • updated 4 weeks ago by h.mon ♦ 22k
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5 follow
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counting the sequencing reads in 10kb regions on a genome-wide scale
genome cnv sequencing written 10 months ago by Bogdan • 690 • updated 4 weeks ago by Biostar ♦♦ 20
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1
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How can I call somatic CNV in tumor samples with no reference (control) samples?
tumor cnv written 5 weeks ago by Pin.Bioinf • 220 • updated 5 weeks ago by Kevin Blighe ♦ 35k
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Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
cna varscan cnv snp written 7 weeks ago by Pin.Bioinf • 220 • updated 5 weeks ago by Biostar ♦♦ 20
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TCGA CNV/SNP6 Reference Sequence - hg19
tcga reference genome snp cnv hg19 written 4.3 years ago by dirigible2012 • 310 • updated 5 weeks ago by Biostar ♦♦ 20
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110
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Pindel output to BED file
sv bed format cnv pindel written 5 weeks ago by znl207 • 10 • updated 5 weeks ago by Pierre Lindenbaum ♦ 116k
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Tool: cnv_facets: somatic Copy Number Variant calling using the facets package
tool cancer somatic command line facets cnv written 5 weeks ago by dariober ♦ 9.8k
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How to download a list of cases containing specific cnvs from TCGA?
tcga cnv written 6 weeks ago by bsb4390 • 0 • updated 6 weeks ago by Kevin Blighe ♦ 35k
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125
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cnvScan indbcount cutoff
cutoff tool cnv written 7 weeks ago by popayekid55 • 50
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1
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219
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1
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Using AnnotSV to annotate XHMM output
annotation annotsv xhmm cnv written 5 months ago by domzimm888 • 0 • updated 6 weeks ago by LGMgeo • 90
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1
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173
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1
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CNV, CNA and SNP calling
cna cnv snp written 6 weeks ago by Pin.Bioinf • 220 • updated 6 weeks ago by Nicolas Rosewick ♦ 7.2k
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85
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Copy number alteration from .bam files panelcn.mops
cna cn.mops panel cnv written 7 weeks ago by Pin.Bioinf • 220
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110
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bedgraph file format in IGV: good for observing CNV ?
bedgraph cnv igv written 7 weeks ago by Pin.Bioinf • 220
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160
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How can I tell if there is CNV for specific gene in IGV?
cnv igv written 7 weeks ago by Pin.Bioinf • 220 • updated 7 weeks ago by Vitis • 1.8k
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1
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107
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GISTIC segment overlap error
gistic scna cnv snp written 7 weeks ago by Wenhu_Cao • 50
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1
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126
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1
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Annotation tool for cnvKit
cnvkit cnvscan cnv written 7 weeks ago by carolina.naomi • 0 • updated 7 weeks ago by geocarvalho • 80
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1
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5 follow
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common CNVs among multiple files
genome cnv written 8 weeks ago by popayekid55 • 50 • updated 8 weeks ago by Kevin Blighe ♦ 35k
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Where Can I Download Most Updated Cnvs Of Hg19 ?
cnv written 6.2 years ago by biorepine • 1.4k • updated 8 weeks ago by Biostar ♦♦ 20
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1
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1
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Help for TCGA CNV data error.
tcga cnv written 9 weeks ago by BioLite • 20 • updated 9 weeks ago by Kevin Blighe ♦ 35k
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3
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6 follow
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Detecting copy number alterations based on RNA-seq data
copy number rna-seq cnv written 16 months ago by igor ♦ 7.2k • updated 10 weeks ago by bhaas • 110
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1
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385
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GISTIC input parameters.
gistic snp cnv written 4 months ago by rin • 30 • updated 10 weeks ago by Biostar ♦♦ 20
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1
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CNV from TCGA data
tcga cnv written 16 months ago by emiliakozlowskaa • 10 • updated 10 weeks ago by Kevin Blighe ♦ 35k
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How to get only specific samples from CNV data ?
tcga cnv written 10 weeks ago by Chaimaa • 150
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141
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Ximmer running error
python java ximmer cnv R written 10 weeks ago by S AR • 50
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140
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How to convert a CNV data into a matrix of row samples and column genes
processing cnv written 12 weeks ago by Chaimaa • 150 • updated 12 weeks ago by finswimmer ♦ 9.0k
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Long Reads: Nanopore/ PacBio
indel nanopre cnv snv longreads written 12 weeks ago by ResearchR • 40
2
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1
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267
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1
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How to find CNV or CN state information from rawcopy output ?
cnv next-gen microarray snp sequencing written 4 months ago by pup-ccmb • 0 • updated 12 weeks ago by lynn_redman • 10
3
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GDC TCGA: cannot find CNV files by their UUIDs
uuid tcga gdc cnv written 3 months ago by Ld_60 • 30 • updated 3 months ago by RamRS ♦ 20k
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1
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200
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How to predict CNV based on Gene Expression dataset
gene expression cnv written 3 months ago by Kritika • 260 • updated 3 months ago by h.mon ♦ 22k
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1
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1
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About TCGA CNV data preprocessing
snp cnv written 3 months ago by Django • 30 • updated 3 months ago by Kevin Blighe ♦ 35k
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