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<prev • 516 results • page 1 of 18 • next >
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Normalize by counting CNV within a pool of VCF files
gatk4 vcf cnv written 8 days ago by Tintest • 0
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GISTIC 2.0 all threshold file versus genome browser
cnv gistic2.0 written 12 days ago by sara.younes • 10 • updated 11 days ago by Kevin Blighe ♦ 21k
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TCGA sample identifiers in BRCA copy number data? TCGA-G9-6371-01A-11D-1784-02_BC1NP2ACXX---TCGA-G9-6371-10A-01D-1784-02_BC1NP2ACXX---Segment.tsv
genome tcga brca cnv sequencing written 11 days ago by jamesdalg • 0
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R plot.DNAcopy with x-axis showing chromosome instead of chromosome coordinate
dnacopy rna-seq cnv written 12 days ago by CY • 130
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6 follow
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problem in matching the names between file names and patients Id in TCGA
problem in matching tcga cnv written 15 days ago by nazaninhoseinkhan • 240
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Copy number variation subtypes
cnv written 3.6 years ago by neenu.abraham8 • 40 • updated 15 days ago by Biostar ♦♦ 20
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combine CNV calls from different softwares
r-gada quantisnp penncnv cnv merge files written 12 months ago by Myosotis1979 • 10 • updated 16 days ago by Biostar ♦♦ 20
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How do I interpret alternative allele <CN2> for structural variants in 1000 genomes VCF?
vcf cnv written 17 months ago by Mr. Dave • 40 • updated 19 days ago by QVINTVS_FABIVS_MAXIMVS • 2.1k
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CNV analysis with BirdSuite
birdsuite cnv affymetrix apt written 25 days ago by Myosotis1979 • 10 • updated 21 days ago by Kevin Blighe ♦ 21k
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102
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readSnpMatrix in FACETS gives error
facets purity cnv ploidy written 29 days ago by hshah • 20
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CNV calling using ExomeDepth
exomedepth reference cnv written 5 weeks ago by Nandini • 550 • updated 5 weeks ago by andrew.j.skelton73 ♦ 5.0k
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How do you run GISTIC2 with ExomeCNV outputs?
gistic exomecnv copy number cnv written 5 weeks ago by Andy Lee • 0
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Detecting copy number alterations based on RNA-seq data
copy number rna-seq cnv written 8 months ago by igor ♦ 6.2k
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How Can I Do Principal Components Analysis ?
cnv written 5.7 years ago by mary • 170 • updated 5 weeks ago by thaihoabo • 60
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CNV details about the normal samples?
cnvkit cnv written 6 weeks ago by kvn95ss • 0 • updated 6 weeks ago by toralmanvar • 330
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How to change the format of CNV files (.txt) obtained from GDC to accepted formats of Variant Effect Predictor?
gdc cnv converting file format written 7 weeks ago by nazaninhoseinkhan • 240 • updated 7 weeks ago by Kevin Blighe ♦ 21k
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ddRADseq copy number variation
radseq cnv written 7 weeks ago by jingjin2203 • 0
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103
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CBS in CNV calling
cbs cnv written 7 weeks ago by CY • 130 • updated 7 weeks ago by Kevin Blighe ♦ 21k
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How to extract the list of genes from TCGA CNV data
tcga genes cnv written 8 weeks ago by aouichechaimaa • 100 • updated 7 weeks ago by Kevin Blighe ♦ 21k
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102
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normalization when calling CNV areas on a genome-wide scale in tumor-germline samples
cnv written 8 weeks ago by Bogdan • 510
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How to compare coverage eveness of two whole genome sequencing runs of the same sample?
wgs library prep cnv sequencing written 9 weeks ago by xuang • 0
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Bos taurus gc5 annotation for PennCNV not available or corrupted?
genome assembly gc cow cnv written 9 weeks ago by Hernán • 110
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106
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Understanding cBioPortal data
mrna cna cbioportal cnv data written 10 weeks ago by 9606 • 300
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Cbioportal/Tcga Cnv Data
copynumber tcga cnv written 4.6 years ago by RoyC • 120 • updated 10 weeks ago by Biostar ♦♦ 20
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Input ChIP-seq coverage changes at centromere/telomeres
telomere chip-seq cnv centromere written 15 months ago by Carlo Yague • 4.0k
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CNVnator Root File
cnvator cnv written 12 weeks ago by BAGeno • 70
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2
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558
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amplicon based germline CNV caller
amplicon cnv germline written 10 months ago by J.F.Jiang • 700 • updated 12 weeks ago by Biostar ♦♦ 20
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6 follow
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a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
indel sv snv cnv written 3 months ago by Bogdan • 510 • updated 3 months ago by Eric T. • 2.2k
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5 follow
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CNV detection using BAM file
bam cnv written 3 months ago by reza • 190 • updated 3 months ago by Eric T. • 2.2k
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Detect exon deletion/duplication from NGS amplicon
amplicon ngs cnv written 3 months ago by sacha • 1.2k • updated 3 months ago by Eric T. • 2.2k
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