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CNVkit with tumor only bam and flat reference
cnvkit tumor cnv written 6 days ago by youki0 • updated 6 days ago by genomax85k
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Format of VCF for CNVkit call fonction and results
vcf cnvkit format cnv written 3.6 years ago by Hällyss50 • updated 7 days ago by Biostar ♦♦ 20
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benchmarking/validation tools for CNVs
truth set benchmarking cnv validation written 3.2 years ago by Jackie70 • updated 11 days ago by German.M.Demidov1.6k
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CNV callers for WES data
R next-gen cnv wes written 22 days ago by patelk26120
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CNVKit noisy scatter plot
cnvkit copy number profile cnv on wes data cnv written 7 weeks ago by tanbiswas60 • updated 6 weeks ago by Eugene A30
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Tool: CNVkit, robust genome-wide copy number detection from DNA sequencing
sv python tool cnv cnvkit written 5.0 years ago by Eric T.2.6k • updated 7 weeks ago by tanbiswas60
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CNVRs visualization with karyoploteR
cnv written 7 weeks ago by rthapa0
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5 follow
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CNV and pseudogenes
pseudogenes ngs cnv exomedepth written 21 months ago by Nandini840 • updated 7 weeks ago by geocarvalho140
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Do tools doing clonal evolution analysis work on unmatched samples too
software wgs scieclone cnv written 10 weeks ago by A3.8k • updated 7 weeks ago by Biostar ♦♦ 20
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SInC for CNV simulation
cnv written 8 weeks ago by katerina-0601960
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GWAS on CNV - looking for method
gwas cnv written 8 weeks ago by GWASG0 • updated 8 weeks ago by chrchang5237.1k
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Calling CNVs without a normal
cnv written 5 months ago by vctrm6710 • updated 8 weeks ago by Biostar ♦♦ 20
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How do you know the best segments in cnvkit after filtering?
cnvkit cnv wgs written 11 weeks ago by Jordan1.1k • updated 11 weeks ago by brunobsouzaa180
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CNV analysis using CN.MOPS
next-gen cnv snp written 5.1 years ago by raghus60610 • updated 11 weeks ago by Biostar ♦♦ 20
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GISTIC results. Too many deleted genes?
gistic cnv snp written 21 months ago by rin30 • updated 12 weeks ago by Kevin Blighe61k
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The outputs of GISTIC
gistic copy number cnv written 4.0 years ago by agicict160 • updated 12 weeks ago by Kevin Blighe61k
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Infer CNV from ATAC-seq data
atac-seq cnv written 3 months ago by BrunoGiotti110
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