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Recent Replies
-
C: Ensembl API, command-line argument by
oars • 40
Fantastic, many thanks for the reply and the references. This performed beautifully for ENSG0000...
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C: Selecting genes that best separate between two groups by
Jean-Karim Heriche ♦ 13k
It depends on what you call large scale data. In R, one typically uses the lda() function in the ...
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C: Selecting genes that best separate between two groups by
lirongrossmann • 10
Thanks! have you used LDA on a high throughput data? I was looking for an R code to run it, but c...
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A: What is the best test to compare the expression of two different sets of genes i by
Jean-Karim Heriche ♦ 13k
What you're doing is not entirely clear. Do you use the KS test to assess whether the 10 values o...
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A: Use UNIX reverse complement by
Alex Reynolds ♦ 20k
$ perl -pe '/^>/ ? print "\n" : chomp' test.fa | while read -r line; do if [[ "$line" == "...
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C: Use UNIX reverse complement by
avranarkin • 0
Thank you, do you know how to solve this if I just use UNIX commands?
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A: Use UNIX reverse complement by
James Ashmore • 2.0k
Install bioawk and use the following command: bioawk -c fastx '{print ">"$name;print revc...
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C: how to resolve this 1-bases cordinates confusion by
jrj.healey • 2.4k
I'm still not really seeing the problem - my apologies. Maybe I'm being really stupid. I'm not s...
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C: False output when intersecting methylation data by
Alex Reynolds ♦ 20k
Your question seems to suggest you want to partition the input space and then map all your elemen...
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C: extract sequences based on ids file by
Mehmet • 170
Thank you very much. It was what I really wanted.
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C: False output when intersecting methylation data by
theodore • 20
Thank you Alex for the answer. Since I am not familiar with the bedops suit could you please elab...
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A: Improving existing assembly using PacBIo reads by
bhagyathimmappa • 0
Dear colindaven, I have used canu and tried to assemble, here is the global stats. PARAMETERS: -...
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