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0
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85
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Multi-allelic CNV (Beginner's level question)
cnv written 4 days ago by jimkozubek • 20 • updated 2 days ago by Kevin Blighe ♦ 39k
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1
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66
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1
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Too many genes in specific chromosomal regions - GISTIC results
gistic cnv written 12 days ago by rin • 30 • updated 3 days ago by Kevin Blighe ♦ 39k
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1
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CNV tools for mitochondrial chromosome using whole-genome sequencing
chrmt cnv written 2.9 years ago by hellbio • 360 • updated 15 days ago by Biostar ♦♦ 20
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2
answers
121
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2
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Whole Exome CNV tools
exome next-gen cnv sequencing written 17 days ago by BAGeno • 120 • updated 17 days ago by ReWeeda • 50
0
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1
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103
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1
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Calling CNV using bcftools
vcf bcftools cnv written 19 days ago by Raheleh • 50 • updated 19 days ago by Pierre Lindenbaum ♦ 117k
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84
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HMM for detecting CNVs from read count signal
readcount hmm cnv R written 19 days ago by fatima.m.zare • 20
1
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1
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107
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1
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copywriteR CNV identification
genome R copy number varation cnv written 20 days ago by gambrdella • 0 • updated 19 days ago by ReWeeda • 50
1
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0
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137
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Number of Probes per Segment for TCGA CNVs
tcga cbs cnv written 5 weeks ago by jrlarsen • 0 • updated 20 days ago by Biostar ♦♦ 20
2
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1
answer
86
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1
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Have you ever obtained user guide of ExomeCNV?
cnv written 21 days ago by oghzzang • 30 • updated 21 days ago by biobiu • 80
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84
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Panel of tumors for CNV detection
cna panel of normals cnv written 21 days ago by biobiu • 80
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2
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180
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2
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GISTIC segment overlap error
gistic scna cnv snp written 3 months ago by Wenhu_Cao • 50 • updated 23 days ago by ysh • 0
0
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1
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80
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1
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How to annotate Copy Number Variations (Output of VarScan2)
varscan cnv annotation written 25 days ago by Raheleh • 50 • updated 25 days ago by Pierre Lindenbaum ♦ 117k
0
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1
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144
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1
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CNVkit Heatmap samples clustering
cnvkit cnv clustering heatmap written 4 weeks ago by jim.paredes • 0 • updated 29 days ago by Eric T. • 2.4k
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1
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83
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1
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can delly identify multiple copies of a unique deletion?
delly cnv written 5 weeks ago by Assa Yeroslaviz • 1.2k • updated 5 weeks ago by Vitis • 2.0k
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3
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171
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3
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Visualizing CNV data based from bed or bedgraph format
R igv bedgraph cnv bed written 5 weeks ago by sm.hashemin • 60
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3
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1.2k
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5 follow
3
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Error ecountered while running conifer with demo data set
python numpy conifer cnv written 20 months ago by mruduka.patel • 0 • updated 6 weeks ago by andrea.citterio • 0
1
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1.9k
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0
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Linking Icd-9 Codes And Keywords With Disease Genes
disease association cnv written 5.1 years ago by Ryan D • 3.3k • updated 6 weeks ago by Biostar ♦♦ 20
0
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0
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115
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0
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CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_mean" with "log2"?
seg_mean cnvkit cnv written 6 weeks ago by 948077241 • 0
0
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1
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204
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1
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Pindel minimum deletion length
cnv written 6 months ago by thomas.faraut • 0 • updated 7 weeks ago by Biostar ♦♦ 20
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127
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0
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CNV calling on mapped IonTorrent reads
cnv written 7 weeks ago by graeme.thorn • 30
1
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0
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1.1k
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0
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What are the best tools/practices for CNV (structural variation) detection/analysis for Illumina family data?
sv wgs snp array wes cnv written 21 months ago by Irina Astrovskaya • 20 • updated 12 weeks ago by h.mon ♦ 23k
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2
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451
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5 follow
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counting the sequencing reads in 10kb regions on a genome-wide scale
genome cnv sequencing written 12 months ago by Bogdan • 720 • updated 12 weeks ago by Biostar ♦♦ 20
4
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1
answer
297
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1
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How can I call somatic CNV in tumor samples with no reference (control) samples?
tumor cnv written 3 months ago by Pin.Bioinf • 240 • updated 3 months ago by Kevin Blighe ♦ 39k
0
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0
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151
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Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
cna varscan cnv snp written 3 months ago by Pin.Bioinf • 240 • updated 3 months ago by Biostar ♦♦ 20
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1
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2.3k
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1
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TCGA CNV/SNP6 Reference Sequence - hg19
tcga reference genome snp cnv hg19 written 4.5 years ago by dirigible2012 • 310 • updated 3 months ago by Biostar ♦♦ 20
1
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0
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167
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Pindel output to BED file
sv bed format cnv pindel written 3 months ago by znl207 • 10 • updated 3 months ago by Pierre Lindenbaum ♦ 117k
0
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0
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263
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Tool: cnv_facets: somatic Copy Number Variant calling using the facets package
tool cancer somatic command line facets cnv written 3 months ago by dariober ♦ 9.9k
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1
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139
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1
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How to download a list of cases containing specific cnvs from TCGA?
tcga cnv written 3 months ago by bsb4390 • 0 • updated 3 months ago by Kevin Blighe ♦ 39k
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168
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0
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cnvScan indbcount cutoff
cutoff tool cnv written 3 months ago by popayekid55 • 50
0
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1
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286
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1
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Using AnnotSV to annotate XHMM output
annotation annotsv xhmm cnv written 7 months ago by domzimm888 • 0 • updated 3 months ago by LGMgeo • 90
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