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Recent Votes
- Need help choosing genes and calculating ranks for GSEA rank file
- Need help choosing genes and calculating ranks for GSEA rank file
- C: ERROR::: vcf to PLINK
- A: Selecting Random Pairs From Fastq?
- Extracting randomly subset of fastq reads from a huge file
- C: R object can allow duplicated column name and storing different types of values
- A: How Do I Convert From Bed Format To Gff Format?
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Recent Replies
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C: Focusing on a handful of genes during RNA seq by
noahhelton98 • 0
If you annotated your assembly already with blast then I don't think you need to do it again - ho...
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C: Focusing on a handful of genes during RNA seq by
snow4964 • 0
The annotation I will be using is the one I have generated through Trinotate. The only reference ...
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C: Annotating reads with the name of the feature to which they map by
lech.kaczmarczyk • 0
Thank you, this was extremely helpful, and gave me some more thinking. Actually, I may use mplile...
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C: ERROR::: vcf to PLINK by
chrchang523 ♦ 7.7k
That is the regular PLINK documentation (and you're misreading it), not a tutorial. A tutorial i...
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C: ERROR::: vcf to PLINK by
chrchang523 ♦ 7.7k
No, you are not running PLINK 1.9. Check your system paths. Only PLINK 1.07, not PLINK 1.9, dis...
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C: Reading multiple txt files and perform Two Sample Mendelian Randomization in R by
Ram ♦ 32k
It's not intuitive, but you can pass all arguments that you'd pass to `read_exposure_data` direct...
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C: R object can allow duplicated column name and storing different types of values by
cwwong13 • 0
Thanks for pointing out the .name_repair option. That works perfectly!
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C: ERROR::: vcf to PLINK by
Manoj • 80
I merged all vcfs into one vcf file using bcftools. I am using PLINK version (v1.9). I am follow...
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C: ERROR::: vcf to PLINK by
Manoj • 80
I tried already. I merged all vcfs into one file using bcftools. I am using PLINK version (PLINK ...
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C: ERROR::: vcf to PLINK by
chrchang523 ♦ 7.7k
Additional notes: - He is currently running PLINK 1.07, which can't read VCF files at all. He ne...
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C: strange looking bcftools norm file by
GenoMax ♦ 96k
See `bcftools view` ([LINK][1]) to operate on the file. [1]: http://samtools.github.io/bcftoo...
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C: Inter-species RNAseq normalisation by
Friederike ♦ 6.8k
What types of analyses are you planning on doing? Salmon's estimates can be corrected for exactly...
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