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Answer: Log-transformation, coefficient of variation, standard error and mass-spectromet
Log-transformation, coefficient of variation, standard error and mass-spectrometry based proteomics
Log-transformation, coefficient of variation, standard error and mass-spectrometry based proteomics
Comment: Setting a threshold on gene expression for subsetting (scRNA-seq)
Comment: Difference between Genotype 0|1 and 1|0 in VCF file?
Answer: Difference between Genotype 0|1 and 1|0 in VCF file?
Answer: Difference between Genotype 0|1 and 1|0 in VCF file?
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Recent Replies
Answer: How to add Ensembl ids after Pseudobulk analysis by DESeq2
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jared.andrews07
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Go back to your original counts matrix or input data and assign consistent IDs during its generation.
Answer: Facing problem with single cell rna seq annotation using singleR
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jared.andrews07
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A few things. >(1)What did i do wrong here? SingleR will annotate each cell with whatever it's most similar to in the reference datas…
Comment: Harmony integration group.by.var parameter
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jared.andrews07
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Couldn't tell you, I avoid Seurat like the plague.
Comment: What is the best practice of scRNA workflow for multiple patients and samples us
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Picasa
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Same. did you get any solution ?
Comment: Setting a threshold on gene expression for subsetting (scRNA-seq)
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LauferVA
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Generally, I cannot advise this in the abstract. The thing is, depending on the treatment group and so forth, there are some transcripts th…
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A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
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Thank you for your response! Interesting paper.
Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
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> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Harmony integration group.by.var parameter
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Picasa
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@jaredandrews07 If I integrate using Donor: ```R RunHarmony(seu_obj, group.by.vars = c("Donor_ID")) ``` Should I also normalize my data…
Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
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QX
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thank you so much!
Comment: Attempt to set 'rownames' on an object with no dimensions
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elbakri.fatimazahrae
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hello everyone, I got the same error for a function immuCellAI_new; result <- ImmuCellAI_new(countData = expr_data_log22, data_type =…
Comment: Merging multiple samples in Seurat
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Picasa
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did you split by sample or donor ?
Comment: Harmony integration group.by.var parameter
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For downstream analysis, after integration, my plan is to annotate each cluster/cell type and then perform a DGE analysis of KO versus WT f…
Comment: How to calculate cell type frequency between two groups in single cell data
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Bastien Hervé
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That is correct
Comment: Setting a threshold on gene expression for subsetting (scRNA-seq)
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ATpoint
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That depends on the data and the marker. Generally I would plot violins per cluster for the marker(s) and see whether one robustly overexpr…
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