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Number of upregulated and downregulated genes from counts matrix
degs up and downregulated genes rna-seq written 7 days ago by taniamahmood38 • 20
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Merging subsets in Seurat after SCTransform
sctransform merge degs seurat subset written 8 days ago by volkanergin • 0
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Survival analysis using differential gene expression
degs survival differential gene expression written 10 weeks ago by gaby_loopes • 0
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Setting up scRNA-seq differential gene expression analaysis
differential gene expresion degs scrnaseq rna-seq written 3 months ago by kalanir • 0 • updated 11 weeks ago by Biostar ♦♦ 20
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RNA Seq Analysis in R
R degs microarray rna-seq written 7 months ago by anasjamshed1994 • 60 • updated 12 weeks ago by dare_devil • 1.4k
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Differentially expressed genes machine learning classifier
degs machine learning limma written 5 months ago by devknight009 • 40 • updated 5 months ago by Kevin Blighe ♦ 71k
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Volcano_plot using R
R degs volcanoplot written 2.1 years ago by Shina • 10 • updated 6 months ago by Biostar ♦♦ 20
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Top Variable DEGs into a heatmap
R degs deseq2 rna-seq heatmap written 6 months ago by ccha97 • 20 • updated 6 months ago by Sebastian Hesse • 200
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Differentially expressed genes machine learning classifer
R degs machine learning written 6 months ago by devknight009 • 40 • updated 6 months ago by Kevin Blighe ♦ 71k
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differentially expressed genes among multiple groups
degs expression limma rna-seq microarray written 6 months ago by Iván • 20 • updated 6 months ago by ATpoint ♦ 46k
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plotting top 10 Differentially expressed genes
R degs rna-seq rstudio plot written 6 months ago by kmmistr1 • 10 • updated 6 months ago by caggtaagtat • 1.4k
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DEG Analysis in R
R degs rna-seq written 7 months ago by anasjamshed1994 • 60 • updated 7 months ago by Gordon Smyth • 2.3k
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Gene id Conversion
degs rna-seq geneid written 7 months ago by ML • 0
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featureCounts, GZIP ERROR:-2
ngs degs subread rna-seq written 7 months ago by bisht20diksha • 20 • updated 7 months ago by Shalu Jhanwar • 490
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If I have a ran-seq data of disease A and also rna-seq for disease B on the same platform and If i extracted DEGs from both diseases and find common DEGs; is this analysis ok?
degs rna-seq written 8 months ago by Md. Al - Mustanjid • 30 • updated 8 months ago by Kevin Blighe ♦ 71k
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Differentially Expressed Genes in merged datasets; How can the differentially expressed genes be found following removing the batch effect?
R batch-effect degs meta-analysis written 8 months ago by amirmehrgou • 0 • updated 8 months ago by ATpoint ♦ 46k
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Can I find common genes by comparing one disease's rna-seq dataset with another disease's microarray dataset?
common gene next-gen microarray degs rna-seq written 8 months ago by Md. Al - Mustanjid • 30
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how to extract mutation from MAF file in python
genome python degs written 8 months ago by anasjamshed1994 • 60
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compareCluster error: On clusterProfiler DEGs enrichments analysis
R bioconductor degs clusterprofiler written 8 months ago by tpm • 10
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How to interpret DEGs of DESeq2 in comparing more than two groups?
degs R deseq2 rna-seq written 8 months ago by scheme4193 • 80
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Why 'filterByExpr' does not eliminate low read counts from the expression data?
filterbyexpr degs edger rna-seq written 9 months ago by svp • 420 • updated 9 months ago by Gordon Smyth • 2.3k
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How to identify down-regulated genes in monocle
scrna-seq monocle degs written 9 months ago by tujuchuanli • 90
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DEGS analysis with DESeq2?
deseq2 degs written 12 months ago by mathavanbioinfo • 60 • updated 11 months ago by Biostar ♦♦ 20
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How to analyze DEGs other than makeContrasts method for time-point RNASeq experiment?
degs rna-seq edger written 12 months ago by anikng • 0
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DEGs analysis with StringTie results?
stringtie degs deseq2 written 12 months ago by mathavanbioinfo • 60
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12 follow
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too few differentially expressed genes with large number of replicates, using each of DESeq2, edgeR and Limma-voom
degs rna-seq written 2.8 years ago by statfa • 540 • updated 15 months ago by guillaume.rbt • 830
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Deferentially Expressed Genes using Genes count data obtained from RNASeq
degs genescount rna-seq written 16 months ago by naseerkhan861 • 10 • updated 16 months ago by Benn ♦ 8.1k
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RNA-seq analysis using RUVSeq: am I doing it right?
degs ruvseq rna-seq edger written 18 months ago by Ankur B. Sharma • 20 • updated 18 months ago by Charles Warden ♦ 8.0k
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Merge DEseq and Cufflinks outputs
cufflinks degs deseq rna-seq written 19 months ago by Lissa Cruz Saavedra • 0
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What is the way of getting deferentially expressed genes from Gene expression Omnibus?
gene geo degs written 19 months ago by Md. Al - Mustanjid • 30 • updated 19 months ago by Kevin Blighe ♦ 71k
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