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2
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132
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If I have a ran-seq data of disease A and also rna-seq for disease B on the same platform and If i extracted DEGs from both diseases and find common DEGs; is this analysis ok?
degs rna-seq written 12 days ago by Md. Al - Mustanjid • 30 • updated 12 days ago by Kevin Blighe ♦ 61k
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131
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Differentially Expressed Genes in merged datasets; How can the differentially expressed genes be found following removing the batch effect?
R batch-effect degs meta-analysis written 25 days ago by amirmehrgou • 0 • updated 25 days ago by ATpoint ♦ 36k
2
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0
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111
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0
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Can I find common genes by comparing one disease's rna-seq dataset with another disease's microarray dataset?
common gene next-gen microarray degs rna-seq written 25 days ago by Md. Al - Mustanjid • 30
1
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0
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131
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0
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how to extract mutation from MAF file in python
genome python degs written 26 days ago by anasjamshed1994 • 20
1
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1
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81
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1
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compareCluster error: On clusterProfiler DEGs enrichments analysis
R bioconductor degs clusterprofiler written 5 weeks ago by tpm • 10
0
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0
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111
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0
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How to interpret DEGs of DESeq2 in comparing more than two groups?
degs R deseq2 rna-seq written 5 weeks ago by scheme4193 • 50
4
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2
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216
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2
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Why 'filterByExpr' does not eliminate low read counts from the expression data?
filterbyexpr degs edger rna-seq written 8 weeks ago by svp • 100 • updated 8 weeks ago by Gordon Smyth • 1.7k
0
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1
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131
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1
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How to identify down-regulated genes in monocle
scrna-seq monocle degs written 8 weeks ago by tujuchuanli • 60
0
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0
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192
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0
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DEGS analysis with DESeq2?
deseq2 degs written 5 months ago by mathavanbioinfo • 50 • updated 3 months ago by Biostar ♦♦ 20
0
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0
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148
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0
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How to analyze DEGs other than makeContrasts method for time-point RNASeq experiment?
degs rna-seq edger written 4 months ago by anikng • 0
0
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0
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129
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0
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DEGs analysis with StringTie results?
stringtie degs deseq2 written 5 months ago by mathavanbioinfo • 50
22
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3
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2.1k
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11 follow
3
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too few differentially expressed genes with large number of replicates, using each of DESeq2, edgeR and Limma-voom
degs rna-seq written 2.2 years ago by statfa • 530 • updated 8 months ago by guillaume.rbt • 800
2
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1
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256
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1
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Deferentially Expressed Genes using Genes count data obtained from RNASeq
degs genescount rna-seq written 8 months ago by naseerkhan861 • 0 • updated 8 months ago by Benn ♦ 8.0k
5
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1
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458
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1
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RNA-seq analysis using RUVSeq: am I doing it right?
degs ruvseq rna-seq edger written 10 months ago by Ankur B. Sharma • 10 • updated 10 months ago by Charles Warden ♦ 7.8k
0
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1
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296
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1
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Merge DEseq and Cufflinks outputs
cufflinks degs deseq rna-seq written 12 months ago by Lissa Cruz Saavedra • 0
11
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1
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515
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1
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What is the way of getting deferentially expressed genes from Gene expression Omnibus?
gene geo degs written 11 months ago by Md. Al - Mustanjid • 30 • updated 11 months ago by Kevin Blighe ♦ 61k
3
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3
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379
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5 follow
3
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How to normalize my results after DESeq2
normalization degs deseq2 rna-seq written 12 months ago by nvijay1991 • 0
9
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1
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1.3k
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1
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Volcano_plot using R
R degs volcanoplot written 17 months ago by Shina • 10 • updated 17 months ago by RamRS ♦ 27k
1
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1
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441
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1
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What is the reason for big difference in DEGs estimation compared to previous estimation?
tophat degs rna-seq written 19 months ago by anc.informatics • 0 • updated 19 months ago by jared.andrews07 ♦ 6.2k
1
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1
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1.2k
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1
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How to perform classification of Differentially expressed genes using Random Forest?
R degs classification randomforeset cancer written 23 months ago by gurudeeb99 • 20 • updated 23 months ago by Devon Ryan ♦ 96k
2
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0
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859
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no significant FDR in gene enrichment analysis
fdr enrichment degs rna-seq written 23 months ago by nazaninhoseinkhan • 410
2
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1
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727
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1
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common genes between DMRs and DEGs
genes dmrs degs written 2.4 years ago by niutster • 100 • updated 2.0 years ago by Pin.Bioinf • 270
12
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2
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4.2k
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10 follow
2
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How to color nodes in Cytoscape according to expression of genes? How should the input file look like?
software degs cytoscape rna-seq expression written 2.5 years ago by orzech_mag • 210 • updated 2.5 years ago by a.zielezinski ♦ 9.2k
3
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1
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803
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1
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DEG detection with datasets generated with different sequencing protocol
degs rna-seq statistics written 2.5 years ago by Vanilla • 80 • updated 2.5 years ago by Santosh Anand ♦ 5.1k
4
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0
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767
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0
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Different gene "nomenclature" in the list of DEGS
degs microarray written 2.6 years ago by Leite • 1.0k
3
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2
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922
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2
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Perfoming functional enrichment of DEGS
R degs pathways written 2.7 years ago by Ariva • 0 • updated 2.7 years ago by svlachavas • 680
1
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1.0k
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0
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positive control and negative control genes list
degs positive control genes written 3.3 years ago by debitboro • 180
1
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1
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1.2k
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1
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For only a few genes, Cuffdiff report more than one FPKM values per locus. Why?
cufflinks tophat degs cuffdiff rna-seq written 3.3 years ago by rice.researcher • 150 • updated 3.3 years ago by theobroma22 • 1.1k
1
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1
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1.0k
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1
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RNA-Seq replicates with big differences in medians of VST values
degs deseq2 rna-seq vst written 3.4 years ago by panconchoclo • 10 • updated 3.4 years ago by shunyip • 190
2
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1
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1.3k
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1
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Finding DEGs using RNA-seq data
degs rna-seq written 4.0 years ago by noorpratap.singh • 290
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