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Scaffolding contigs generated by minia

genome assembly denovo_assembly minia scaffolding written 8 weeks ago by Mostafa • 10 • updated 8 weeks ago by RamRS ♦ 19k

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Finding fragemented transcriptome

denovo_assembly transcriptome written 17 months ago by EVR • 490 • updated 17 months ago by Rohit • 1.3k

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Recent Replies

C: Adaptor trimming for RNAseq by MAPK • 1.3k
Yes, it was provided by the sequencing facility.
C: Why is 0/0 homozygous reference call in VCF useful information? by Pierre Lindenbaum ♦ 114k
> . What decisions regarding generation would affect the answer to this question? tools like ...
C: Criteria for Overlapping SNPs by WouterDeCoster ♦ 34k
> When two SNPs doesn't have the same Chromosome Position even if the > involved allele are...
C: Why is 0/0 homozygous reference call in VCF useful information? by karl.stamm ♦ 3.3k
I like to know the difference between "confident data we see hom-ref" and "no-data". Your single-...
C: What would be the trend in next few years in NGS era? by lieven.sterck • 3.1k
agreed! though they'll likely resolve that too in the future ;) I do also agree with https://ww...
C: Criteria for Overlapping SNPs by alexandramirandaaa • 0
So as to interpret your answer. When two SNPs doesn't have the same Chromosome Position even if t...
C: Why is 0/0 homozygous reference call in VCF useful information? by lillian.thistlethwaite • 0
I didn't generate the VCF. It was given to me by a collaborator. What decisions regarding generat...
C: Criteria for Overlapping SNPs by alexandramirandaaa • 0
I have the data of SNPs of Alzheimer's Disease and what's included is Chromosome, Position, Marke...
A: How to download GenBank database? by jrj.healey ♦ 8.4k
https://github.com/kblin/ncbi-genome-download Use this, follow some of the examples on the front...
C: Create a Phylogenetic tree in R by jrj.healey ♦ 8.4k
Most R packages are for visualising and analysing trees you already have. You can use Clustal to ...
A: Pindel -x option by goodez • 390
-n/--min_NT_size only report inserted (NT) sequences in deletions greater tha...
C: Why is 0/0 homozygous reference call in VCF useful information? by Pierre Lindenbaum ♦ 114k
and how did you generate the VCF ?

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