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Scaffolding contigs generated by minia

genome assembly denovo_assembly minia scaffolding written 9 days ago by Mostafa • 10 • updated 8 days ago by RamRS ♦ 17k

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Finding fragemented transcriptome

denovo_assembly transcriptome written 15 months ago by EVR • 480 • updated 15 months ago by Rohit • 1.3k

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Scholar to Kevin Blighe ♦ 28k
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Recent Replies

A: How to use simultaneously long and short reads to assemble de novo a transcript by Antonio R. Franco • 3.8k
Obviously it depends of the program you use [Oases][1] for example, uses categories or "channels...
C: hisat2 warning message dunring alignment of fasta file with reference genome by shuksi1984 • 30
The command is: /tools/hisat/hisat2 -f -x /references/grch38/genome -1 /inputfile/SRR925687...
C: Bioinformatics terms that might be confusing for beginners by Kevin Blighe ♦ 28k
Just to go back one step: the very term, *Bioinformatics*, is confusing. As different people have...
C: Toxins ion channel inhibitors by jrj.healey ♦ 6.8k
There isn't one magical search that is going to give you perfect results. Your search is fairly p...
C: ENSEMBL annotation file for quantification: which file to use? by Ben_Ensembl • 680
Sure- I'll talk with my colleagues who are responsible for the README file and see whether we can...
C: How to take input TCGA miRNA data in Limma R package for differential expression by Kevin Blighe ♦ 28k
By the way, it looks like you have ***micro-RNA-seq*** data, not ***microarray***.
C: How to take input TCGA miRNA data in Limma R package for differential expression by Kevin Blighe ♦ 28k
Take ***read_count*** and use that as input for Limma-Voom. Presumably you have separate ***read_...
C: edirect esearch : exclude given accessions by Sej Modha ♦ 3.6k
I hope you noticed that taxonomy ID for Salmonella is `txid590` and the link you have provided he...
C: How to take input TCGA miRNA data in Limma R package for differential expression by pradyumna Jayaram • 20
Hi, @skjobs1234 did you find an appropriate answer for your query? Even I'm performing the simi...
C: gene expression analysis using RNA seq data by Kevin Blighe ♦ 28k
Thanks Nicolas. Maryam, you must mean this: **HTSeq - Counts**: these are the raw counts; howev...
A: bcftools merge: does it only merge overlapping variants or all by finswimmer ♦ 5.4k
Hello, it also merge variants that are present in one file but not in the other. In that case th...
C: Bioinformatics terms that might be confusing for beginners by b.nota ♦ 4.9k
Phred stands for Phil's Read Editor. It is software (Phred, Phrap, and Consed) written by Phil Gr...

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