denovo_assembly Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answers

790

views

answers

Scaffolding contigs generated by minia

genome assembly denovo_assembly minia scaffolding written 2.1 years ago by Mostafa • 20 • updated 2.1 years ago by RamRS ♦ 30k

votes

answers

852

views

answers

Finding fragemented transcriptome

denovo_assembly transcriptome written 3.4 years ago by EVR • 570 • updated 3.4 years ago by Rohit • 1.4k

Recent Votes

Recent Locations • All »

boston, 1 minute ago
SouthKorea, 2 minutes ago
Republic of Korea/CHA biotech, 6 minutes ago
University of Valladolid, 7 minutes ago

Recent Awards • All »

Appreciated to Pierre Lindenbaum ♦ 131k
Appreciated to Rory Stark • 860
Autobiographer to Rory Stark • 860
Teacher to Papyrus • 430
Scholar to Papyrus • 430
Appreciated to ATpoint ♦ 40k

Recent Replies

A: Looping over list in R by rpolicastro • 2.1k
Using map (the tidyverse equivalent to lapply) and an anonymous function makes this pretty easy. ...
C: Reproducing this radar plot in r by A • 3.9k
Thank you so much. I have edited the main post
C: Reproducing this radar plot in r by rpolicastro • 2.1k
Can you edit your posts to include the results of `dput(head(responders[1:2,]))` and `dput(head(n...
C: Why did my bowtie option (--no-unal) not present in the help? by jaqx008 • 70
Its strange cos on my other devices I have it, but not in my magnolia account. And yes I am sure
C: What software to use to asses phenotypic information from ULBiobank dataset? by Shicheng Guo • 8.4k
Hi Kevin, do you know how to download the ukbxxx.enc file mentioned by ukbtools? ukb_unpack...
C: Why counts to tpm gives different values compared to tpm from kallisto? by newbie • 90
I saw the effective length thing here [A review of RNA-Seq expression units][1]. Yes I feel like ...
C: Why counts to tpm gives different values compared to tpm from kallisto? by h.mon ♦ 31k
kallisto (or Salmon) would run these 300 samples really quickly, so if consider important get bet...
C: BLASTP: different alignment scores depending on which sequence is subject/query by JC ♦ 12k
I guess the alignment is scoring different when you open a gap in query that in the target
A: Any alternatives to Cellranger aligner that Seurat can read? by ATpoint ♦ 40k
STAR-solo would be the closest to Cellranger. Alternatives are Alevin and kallisto/bustools.
C: Graphia: A platform for the graph-based visualisation and analysis of complex da by genomax ♦ 91k
Can you link the software repo as well?
C: Galaxy .embl file conversion by genomax ♦ 91k
Please post this over at Galaxy help forum to get specific help with Galaxy: https://help.galaxyp...
A: Galaxy .embl file conversion by Juke34 • 4.8k
You need to use `buildRMLibFromEMBL.pl` from RepeatMasker to convert the EMBL file into fasta. Th...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1342 users visited in the last hour