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Scaffolding contigs generated by minia

genome assembly denovo_assembly minia scaffolding written 17 months ago by Mostafa • 20 • updated 17 months ago by RamRS ♦ 25k

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Finding fragemented transcriptome

denovo_assembly transcriptome written 2.7 years ago by EVR • 570 • updated 2.7 years ago by Rohit • 1.4k

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Recent Replies

C: protein 3D model not showing all AA residues by cocchi.e89 • 40
Thanks for the useful answer! Is there any way to model this part?
C: protein 3D model not showing all AA residues by cocchi.e89 • 40
But they have a limitation to 1500 AA sequence. I suppose I cannot cut a portion of the protein a...
A: dxy (Nei 1987) calculation by beausoleilmo • 300
In [this paper][1], there is a link to [their supplementary material][2]. Within, these is a `gen...
C: Gencove Open and free API. Any DNA data from any type to VCF in 10 to 30 mins. by Charles Warden ♦ 7.6k
Thank you! I sent them an e-mail (to **support@gencove.com**) relatively recently (I believe a l...
C: protein 3D model not showing all AA residues by Joe ♦ 16k
Phyre specifically only models regions it finds strong homologies for. If you want full models, ...
C: Gencove Open and free API. Any DNA data from any type to VCF in 10 to 30 mins. by Charles Warden ♦ 7.6k
For example, has anybody tried STITCH? https://github.com/rwdavies/STITCH After I take a look, ...
C: Gencove Open and free API. Any DNA data from any type to VCF in 10 to 30 mins. by genomax ♦ 78k
Original poster has not logged in for 2.5 yrs. You may want to contact the company directly.
A: protein 3D model not showing all AA residues by Mensur Dlakic • 3.4k
The most likely explanation is that there is no homologous structure for the missing part of your...
A: Gencove Open and free API. Any DNA data from any type to VCF in 10 to 30 mins. by Charles Warden ♦ 7.6k
Thank you for posting this. I was about to create a Biostars post asking about free alternatives...
C: How many PCs should be considered for downstream analyses? by Mensur Dlakic • 3.4k
> However, there is some change in the orientation of the clustering in each of the UMAP. The...
A: SCOP domain classification - numbers identificantion by Mensur Dlakic • 3.4k
Parseable SCOPe files are [**here**][1], and you want the one that starts with `dir.cla`. That pa...
C: Append TPM value to sequence header in FASTA file by ATpoint ♦ 29k
You can use the code option `101010` to properly format code and data.

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