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2
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1
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96
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1
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NO FDR <0.05 in the whole dataset
fdr R qvalue rna-seq written 12 days ago by camillab. • 40 • updated 12 days ago by rpolicastro ♦ 4.0k
4
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1
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121
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1
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p.adjusted p value
fdr R rna-seq pvalue written 16 days ago by camillab. • 40 • updated 16 days ago by ATpoint ♦ 46k
1
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0
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167
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0
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Problems with FDR in RNA-seq analysis
fdr partek rna-seq sequencing written 6 weeks ago by mdribeir • 0
4
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1
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171
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1
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Subset DEG results and error control
fdr error control genome-wide inference statistics written 12 weeks ago by thyleal • 150 • updated 12 weeks ago by rpolicastro ♦ 4.0k
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0
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395
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0
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False discovery rates for moderated t-statistic
fdr R empirical bayes dep p-value written 12 weeks ago by alexei.leliavski • 0
5
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1
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316
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6 follow
1
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Should I do P-value adjustment in this case?
fdr statistics written 3 months ago by deep771992chanda • 30 • updated 3 months ago by seo • 0
7
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2
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223
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7 follow
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Problem in understanding False Discovery Rate (FDR)
fdr statistics written 3 months ago by deep771992chanda • 30
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2.3k
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1
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How to determine which SNPs are above FDR line?
fdr R snp gwas written 5.0 years ago by joshf • 20 • updated 4 months ago by Biostar ♦♦ 20
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1
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224
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5 follow
1
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FDR for multiple contrasts
fdr proteomics p.adjust written 4 months ago by A. Domingues • 2.4k • updated 4 months ago by dariober ♦ 11k
1
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1
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271
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1
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Is it acceptable to use different FDR cutoffs for peak calling in different ChIP-seq experiments (with same antibody)?
fdr peak calling chip-seq homer statistics written 7 months ago by science_lizard • 0 • updated 7 months ago by benformatics • 2.1k
2
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0
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334
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0
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plink association: FDR is one for all
fdr gwas plink rna-seq written 10 months ago by ali.al-fatlawi • 10 • updated 10 months ago by ATpoint ♦ 46k
0
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0
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842
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0
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Correcting for multiple-testing - interaction model with large differences in variance between groups
fdr deseq2 fdrtool multifactorial design written 2.8 years ago by npharmston • 0 • updated 11 months ago by Biostar ♦♦ 20
5
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2
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330
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2
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Considering only a handful of genes of a priori interest (RNA seq), is it legitimate to not perform FDR adjustment of p-values?
fdr false discovery rate p values rna-seq written 13 months ago by marcos.georgiades.18 • 10
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637
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How they get such a low adjusted P value in differential analysis of proteomics data?
proteomics differential analysis p value fdr dep written 16 months ago by Xiaokang ZH • 50
0
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0
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533
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0
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How to do confidence bounds on False Discovery rate?
fdr R confidence bounds written 20 months ago by anamaria • 140
3
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1
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623
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1
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edgeR FDR always 1
fdr differentialexpression edger mirna written 21 months ago by AngAdd • 0 • updated 21 months ago by swbarnes2 ♦ 9.6k
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0
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654
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0
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FDR for combined QQ plot
qq fdr written 21 months ago by anamaria • 140
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528
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0
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FDR and mixed FDR in limma fry()
fdr limma written 21 months ago by Melinda • 0
2
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1
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957
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1
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edgeR analysis outputs FDR equals 1
fdr rna-seq edger written 22 months ago by silas008 • 140 • updated 22 months ago by swbarnes2 ♦ 9.6k
1
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1
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3.4k
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1
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Setting a threshold for FDR correction
false discovery rate fdr multiple testing written 22 months ago by kelly.wang135 • 50 • updated 22 months ago by russhh ♦ 5.5k
2
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2.3k
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What is the ideal FDR and fold change cutoff to consider in a RNA-seq experiment and which one should be the priority for selecting the DEGs?
fdr deseq2 rna-seq deg fold change written 2.4 years ago by aishu.jp • 10
6
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5 follow
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qvalues are the same, thus yielding insignificant results
fdr adjustedpvalue gene analysis qvalue written 2.6 years ago by ulapei • 20
2
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0
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1.1k
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0
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no significant FDR in gene enrichment analysis
fdr enrichment degs rna-seq written 2.6 years ago by nazaninhoseinkhan • 410
0
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0
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860
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0
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Significantly changed genes increase after Benjamini Hochberg correction
fdr matlab ttest microarray written 3.3 years ago by hkarakurt • 110
3
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1
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1.2k
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5 follow
1
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what to do when adjusted p-values are not acceptable in RNASeq?
fdr rna-seq written 3.5 years ago by nazaninhoseinkhan • 410
0
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0
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740
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0
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No significant differential methylated regions in control and eutopic samples comparison
differentially methylated regions fdr written 3.6 years ago by niutster • 100
3
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1
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1
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Should p-values resulting from the experimental validation of genes selected by FDR also be FDR-corrected?
fdr p-values multiple testing validation written 3.7 years ago by correlationmatrix • 20 • updated 3.7 years ago by Nicolas Rosewick ♦ 9.3k
2
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1
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1.4k
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1
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SPIA results show FDR=1 for RNA-Seq differential expression data downloaded from TCGA
fdr spia tcga rna-seq differential expression written 3.9 years ago by asnanizami • 0 • updated 3.9 years ago by theobroma22 • 1.1k
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2
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Multiple hypothesis testing, Fst outliers
fdr population genomics gpat pfst fst written 4.0 years ago by chrisbala10 • 10
8
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1
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1.5k
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1
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Fold Change accepts, FDR denies; which one to use ?
fdr fc rna-seq deg written 4.1 years ago by Farbod • 3.3k • updated 4.1 years ago by Devon Ryan ♦ 98k
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