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5
votes
1
answer
139
views
6 follow
1
answer
Should I do P-value adjustment in this case?
fdr statistics written 7 days ago by deep771992chanda • 30 • updated 5 days ago by seo • 0
7
votes
2
answers
128
views
7 follow
2
answers
Problem in understanding False Discovery Rate (FDR)
fdr statistics written 7 days ago by deep771992chanda • 30
1
vote
1
answer
2.1k
views
1
answer
How to determine which SNPs are above FDR line?
fdr R snp gwas written 4.7 years ago by joshf • 20 • updated 25 days ago by Biostar ♦♦ 20
7
votes
1
answer
133
views
5 follow
1
answer
FDR for multiple contrasts
fdr proteomics p.adjust written 28 days ago by A. Domingues • 2.4k • updated 28 days ago by dariober ♦ 11k
1
vote
1
answer
215
views
1
answer
Is it acceptable to use different FDR cutoffs for peak calling in different ChIP-seq experiments (with same antibody)?
fdr peak calling chip-seq homer statistics written 4 months ago by science_lizard • 0 • updated 4 months ago by benformatics • 2.0k
2
votes
0
answers
270
views
0
answers
plink association: FDR is one for all
fdr gwas plink rna-seq written 7 months ago by ali.al-fatlawi • 10 • updated 7 months ago by ATpoint ♦ 41k
0
votes
0
answers
783
views
0
answers
Correcting for multiple-testing - interaction model with large differences in variance between groups
fdr deseq2 fdrtool multifactorial design written 2.5 years ago by npharmston • 0 • updated 7 months ago by Biostar ♦♦ 20
5
votes
2
answers
268
views
2
answers
Considering only a handful of genes of a priori interest (RNA seq), is it legitimate to not perform FDR adjustment of p-values?
fdr false discovery rate p values rna-seq written 9 months ago by marcos.georgiades.18 • 10
1
vote
0
answers
494
views
0
answers
How they get such a low adjusted P value in differential analysis of proteomics data?
proteomics differential analysis p value fdr dep written 13 months ago by Xiaokang ZH • 50
0
votes
0
answers
442
views
0
answers
How to do confidence bounds on False Discovery rate?
fdr R confidence bounds written 17 months ago by anamaria • 110
3
votes
1
answer
532
views
1
answer
edgeR FDR always 1
fdr differentialexpression edger mirna written 17 months ago by AngAdd • 0 • updated 17 months ago by swbarnes2 ♦ 9.1k
0
votes
0
answers
556
views
0
answers
FDR for combined QQ plot
qq fdr written 17 months ago by anamaria • 110
1
vote
0
answers
444
views
0
answers
FDR and mixed FDR in limma fry()
fdr limma written 18 months ago by Melinda • 0
2
votes
1
answer
825
views
1
answer
edgeR analysis outputs FDR equals 1
fdr rna-seq edger written 18 months ago by silas008 • 140 • updated 18 months ago by swbarnes2 ♦ 9.1k
1
vote
1
answer
2.5k
views
1
answer
Setting a threshold for FDR correction
false discovery rate fdr multiple testing written 19 months ago by kelly.wang135 • 50 • updated 19 months ago by russhh ♦ 5.5k
2
votes
0
answers
1.9k
views
0
answers
What is the ideal FDR and fold change cutoff to consider in a RNA-seq experiment and which one should be the priority for selecting the DEGs?
fdr deseq2 rna-seq deg fold change written 2.1 years ago by aishu.jp • 10
6
votes
2
answers
996
views
5 follow
2
answers
qvalues are the same, thus yielding insignificant results
fdr adjustedpvalue gene analysis qvalue written 2.3 years ago by ulapei • 20
2
votes
0
answers
991
views
0
answers
no significant FDR in gene enrichment analysis
fdr enrichment degs rna-seq written 2.3 years ago by nazaninhoseinkhan • 410
0
votes
0
answers
821
views
0
answers
Significantly changed genes increase after Benjamini Hochberg correction
fdr matlab ttest microarray written 3.0 years ago by hkarakurt • 100
3
votes
1
answer
1.1k
views
5 follow
1
answer
what to do when adjusted p-values are not acceptable in RNASeq?
fdr rna-seq written 3.2 years ago by nazaninhoseinkhan • 410
0
votes
0
answers
709
views
0
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No significant differential methylated regions in control and eutopic samples comparison
differentially methylated regions fdr written 3.3 years ago by niutster • 100
3
votes
1
answer
704
views
1
answer
Should p-values resulting from the experimental validation of genes selected by FDR also be FDR-corrected?
fdr p-values multiple testing validation written 3.5 years ago by correlationmatrix • 20 • updated 3.5 years ago by Nicolas Rosewick ♦ 9.2k
2
votes
1
answer
1.3k
views
1
answer
SPIA results show FDR=1 for RNA-Seq differential expression data downloaded from TCGA
fdr spia tcga rna-seq differential expression written 3.6 years ago by asnanizami • 0 • updated 3.6 years ago by theobroma22 • 1.1k
1
vote
2
answers
2.1k
views
2
answers
Multiple hypothesis testing, Fst outliers
fdr population genomics gpat pfst fst written 3.7 years ago by chrisbala10 • 10
8
votes
1
answer
1.5k
views
1
answer
Fold Change accepts, FDR denies; which one to use ?
fdr fc rna-seq deg written 3.8 years ago by Farbod • 3.3k • updated 3.8 years ago by Devon Ryan ♦ 97k
0
votes
0
answers
2.5k
views
0
answers
How to correctly calculate Storey-Tibshriani FDR Q Values using R Package "QValue"?
fdr R p value python q value written 3.9 years ago by Tom • 30
0
votes
2
answers
1.2k
views
2
answers
PWMs and FDR
fdr pwm multiple-hypothesis-testing written 4.0 years ago by Opt • 40 • updated 4.0 years ago by Santosh Anand ♦ 5.2k
1
vote
1
answer
2.1k
views
1
answer
MatrixeQTL FDR and Q-Qplot
fdr matrixeqtl tool written 5.7 years ago by toyan.j.p • 30 • updated 4.2 years ago by Laura • 0
3
votes
2
answers
1.7k
views
2
answers
What is the criteria for significant DEGs when FDR value for all genes is 1?
fdr gfold written 4.3 years ago by mirza • 130
0
votes
0
answers
2.2k
views
0
answers
calculating FDR threshold for FST and PBS statistics
fdr fst pbs genome-wide significance written 4.7 years ago by ald4786 • 0
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