Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 31 results • page 1 of 2 • next >
5
votes
2
answers
169
views
2
answers
Considering only a handful of genes of a priori interest (RNA seq), is it legitimate to not perform FDR adjustment of p-values?
fdr false discovery rate p values rna-seq written 9 weeks ago by marcos.georgiades.18 • 10
1
vote
0
answers
251
views
0
answers
How they get such a low adjusted P value in differential analysis of proteomics data?
proteomics differential analysis p value fdr dep written 5 months ago by Xiaokang ZH • 40
0
votes
0
answers
236
views
0
answers
How to do confidence bounds on False Discovery rate?
fdr R confidence bounds written 9 months ago by anamaria • 90
3
votes
1
answer
337
views
1
answer
edgeR FDR always 1
fdr differentialexpression edger mirna written 10 months ago by AngAdd • 0 • updated 10 months ago by swbarnes2 ♦ 7.5k
0
votes
0
answers
295
views
0
answers
FDR for combined QQ plot
qq fdr written 10 months ago by anamaria • 90
1
vote
0
answers
275
views
0
answers
FDR and mixed FDR in limma fry()
fdr limma written 10 months ago by Melinda • 0
2
votes
1
answer
483
views
1
answer
edgeR analysis outputs FDR equals 1
fdr rna-seq edger written 10 months ago by silas008 • 100 • updated 10 months ago by swbarnes2 ♦ 7.5k
1
vote
1
answer
1.2k
views
1
answer
Setting a threshold for FDR correction
false discovery rate fdr multiple testing written 11 months ago by kelly.wang135 • 50 • updated 11 months ago by russhh ♦ 5.2k
2
votes
0
answers
1.2k
views
0
answers
What is the ideal FDR and fold change cutoff to consider in a RNA-seq experiment and which one should be the priority for selecting the DEGs?
fdr deseq2 rna-seq deg fold change written 17 months ago by aishu.jp • 10
6
votes
2
answers
793
views
5 follow
2
answers
qvalues are the same, thus yielding insignificant results
fdr adjustedpvalue gene analysis qvalue written 20 months ago by ulapei • 20
2
votes
0
answers
725
views
0
answers
no significant FDR in gene enrichment analysis
fdr enrichment degs rna-seq written 20 months ago by nazaninhoseinkhan • 390
0
votes
0
answers
612
views
0
answers
Correcting for multiple-testing - interaction model with large differences in variance between groups
fdr deseq2 fdrtool multifactorial design written 22 months ago by npharmston • 0
0
votes
0
answers
704
views
0
answers
Significantly changed genes increase after Benjamini Hochberg correction
fdr matlab ttest microarray written 2.4 years ago by hkarakurt • 90
3
votes
1
answer
907
views
5 follow
1
answer
what to do when adjusted p-values are not acceptable in RNASeq?
fdr rna-seq written 2.6 years ago by nazaninhoseinkhan • 390
0
votes
0
answers
623
views
0
answers
No significant differential methylated regions in control and eutopic samples comparison
differentially methylated regions fdr written 2.6 years ago by niutster • 90
3
votes
1
answer
624
views
1
answer
Should p-values resulting from the experimental validation of genes selected by FDR also be FDR-corrected?
fdr p-values multiple testing validation written 2.8 years ago by correlationmatrix • 20 • updated 2.8 years ago by Nicolas Rosewick ♦ 8.7k
2
votes
1
answer
1.2k
views
1
answer
SPIA results show FDR=1 for RNA-Seq differential expression data downloaded from TCGA
fdr spia tcga rna-seq differential expression written 3.0 years ago by asnanizami • 0 • updated 3.0 years ago by theobroma22 • 1.1k
1
vote
2
answers
1.8k
views
2
answers
Multiple hypothesis testing, Fst outliers
fdr population genomics gpat pfst fst written 3.0 years ago by chrisbala10 • 10
8
votes
1
answer
1.3k
views
1
answer
Fold Change accepts, FDR denies; which one to use ?
fdr fc rna-seq deg written 3.2 years ago by Farbod • 3.3k • updated 3.2 years ago by Devon Ryan ♦ 94k
0
votes
0
answers
2.2k
views
0
answers
How to correctly calculate Storey-Tibshriani FDR Q Values using R Package "QValue"?
fdr R p value python q value written 3.2 years ago by Tom • 30
0
votes
2
answers
1.1k
views
2
answers
PWMs and FDR
fdr pwm multiple-hypothesis-testing written 3.4 years ago by Opt • 40 • updated 3.4 years ago by Santosh Anand ♦ 5.0k
1
vote
1
answer
1.8k
views
1
answer
MatrixeQTL FDR and Q-Qplot
fdr matrixeqtl tool written 5.1 years ago by toyan.j.p • 30 • updated 3.6 years ago by Laura • 0
3
votes
2
answers
1.6k
views
2
answers
What is the criteria for significant DEGs when FDR value for all genes is 1?
fdr gfold written 3.6 years ago by mirza • 90
0
votes
0
answers
1.9k
views
0
answers
calculating FDR threshold for FST and PBS statistics
fdr fst pbs genome-wide significance written 4.1 years ago by ald4786 • 0
1
vote
1
answer
1.8k
views
1
answer
How to determine which SNPs are above FDR line?
fdr R snp gwas written 4.1 years ago by joshf • 20 • updated 4.1 years ago by Kolea Zimmerman • 100
2
votes
0
answers
1.5k
views
0
answers
False discovery rate (FDR) Microarray
fdr microarray written 4.3 years ago by jaqy • 20 • updated 4.3 years ago by SES ♦ 8.3k
0
votes
0
answers
1.3k
views
0
answers
p-value correction in meta-analysis of cancer cohorts
fdr meta analysis p-value correction cancer written 4.4 years ago by Bontus • 80
0
votes
1
answer
1.9k
views
1
answer
How to interpret gene-FDR plots
fdr false discovery rate cssam written 4.9 years ago by r.monil • 0 • updated 4.8 years ago by Irsan • 7.1k
2
votes
1
answer
1.7k
views
1
answer
Concerning FDR calculation using Limma
agilent fdr microarray limma written 4.8 years ago by sebastien200109 • 0
0
votes
1
answer
1.1k
views
1
answer
MACS: overalll expected FDR?
macs fdr written 4.9 years ago by linuxjoga • 0 • updated 4.9 years ago by Ming Tang • 2.6k
<prev • 31 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • New York, NY USA, 7 minutes ago
  • China, 8 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1426 users visited in the last hour