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5
votes
1
answer
300
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1
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fgsea: What does fgseaMultilevel argument sampleSize mean/when to change it?
fgsea gsea rna-seq functional enrichment analysis written 10 weeks ago by kelen • 160
1
vote
0
answers
248
views
0
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Need some help with next steps after getting fGSEA results from Microarray data.
fgsea microarray differential expression analysis written 5 months ago by DataStoryTeller • 30
5
votes
1
answer
402
views
1
answer
optimal size of gene sets for fgsea analysis
fgsea pathway written 6 months ago by ayuhutamisyarif5 • 0 • updated 6 months ago by alserg • 640
9
votes
1
answer
606
views
5 follow
1
answer
fGSEA with preranked data based off gene expression using DeSeq2
fgsea R deseq2 rna-seq gsea written 8 months ago by jack.henry • 40
9
votes
1
answer
933
views
5 follow
1
answer
fgsea nMoreExtreme meaning
fgsea R rna-seq gsea written 8 months ago by jack.henry • 40 • updated 8 months ago by weichengz • 0
8
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2
answers
1.9k
views
7 follow
2
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GSEA PreRanked lists from DESeq2 results table
fgsea deseq2 gsea preranked written 12 months ago by Assa Yeroslaviz • 1.4k • updated 12 months ago by jomo018 • 610
0
votes
1
answer
579
views
1
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How to solve: fgsea returns empty dataframe
fgsea R gsea written 14 months ago by nattzy94 • 20
9
votes
1
answer
1.1k
views
7 follow
1
answer
fGSEA result to csv
fgsea rna-seq gsea written 15 months ago by mbk0asis • 610 • updated 15 months ago by alserg • 640
1
vote
0
answers
466
views
0
answers
GSEA preranked analysis for unsigned/one-sided gene rankings?
fgsea one-sided gsea preranked unsigned written 15 months ago by keith.hughitt • 280 • updated 15 months ago by Biostar ♦♦ 20
9
votes
3
answers
2.0k
views
6 follow
3
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How to plot GSEA result?
fgsea gsea plot plotenrichment R written 15 months ago by Rahil • 180 • updated 15 months ago by Barry Digby • 640
11
votes
1
answer
4.9k
views
11 follow
1
answer
Multiple plots outputs using for loop in R
fgsea R loop written 19 months ago by Barry Digby • 640 • updated 19 months ago by Prakash • 2.1k
1
vote
1
answer
1.1k
views
1
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GSEA on preranked list with weighted enrichment statistic (exponent=1) in R
fgsea dose rna-seq written 24 months ago by cmgraef • 10 • updated 23 months ago by alserg • 640
3
votes
1
answer
658
views
1
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Is there a name for these charts?
fgsea visualization gsea written 2.9 years ago by russhh ♦ 5.5k • updated 2.9 years ago by alserg • 640
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