gene_onthology Posts

A: How to Interpret p-value from multi-curve Kaplan-Meier Graph by Kevin Blighe ♦ 68k
The default p-value that is calculated is the log-rank p-value. It is testing the null hypothesis...
C: How to use normalize.loess() from the affy package ? by ATpoint ♦ 42k
Can you clarify how many samples you have and what the final analysis goal is? Not sure the affy ...
C: How do I configure blast+ to access databases on an external hard drive? by lieven.sterck ♦ 9.0k
yes, that behaviour of update_blastdb.pl is correct as it purpose is to download and unpack the b...
A: How to use normalize.loess() from the affy package ? by Kevin Blighe ♦ 68k
I am not sure that the function, or even the LOESS method itself, is designed for use on just a s...
C: How do I configure blast+ to access databases on an external hard drive? by lieven.sterck ♦ 9.0k
are you in a linux or windows environment?
A: Save image from gephi overview by Shaminur • 80
The only save option is the preview section.
A: Quantify Isoforms in RNA-Seq data by kristoffer.vittingseerup • 3.4k
I have written a discussion of different tools [here][1]. [1]: https://bioconductor.org/packa...
C: Building pangenome reference by samuel.a.odonnell • 60
You are reaching into the realm of genome graphs, a single space representing multiple genomes Lo...
C: NCBI Eutils error forwarding request by Bioinformatician_in_trouble • 20
I guess it is the issue with the website as I am getting the same message when I tried 5 mins ago.
A: From bedgraph to bigwig by amrsalaheldin50 • 0
I wrote it but nothing changed in the files i don't know why :(
C: how to get the geneNames or bedfile from fasta sequences by xiaoguang • 40
I think you must have one complete reference genome, otherwise you can not get the filtered fast...
C: Convert R script to python(implementation of the UPGMA OR neighbor joining algor by karl.stamm ♦ 3.9k
Why would you want to change code that works into another language?

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