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132

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glmnet and RNA-seq data

R deseq2 cox glmnet rna-seq written 10 weeks ago by Anastaziel • 0

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cv.glmnet() gives very close cvm value

lasso glmnet survival written 11 weeks ago by MatthewP • 390 • updated 11 weeks ago by Biostar ♦♦ 20

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1.3k

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6 follow

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Predicting survival of cancer patients using glmnet cox

R cox survival glmnet cancer written 8 months ago by Researcher • 50 • updated 7 months ago by Kevin Blighe ♦ 53k

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290

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Help for glmnet analyzing gene-pairs survival datas.

gene-pairs survival analysis glmnet written 10 months ago by BioLite • 20 • updated 10 months ago by Biostar ♦♦ 20

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733

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does the multiple linear regression from glmnet generate a formula?

lasso ridge multiple linear regression glmnet written 11 months ago by demoraesdiogo2017 • 10

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276

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are my results what they are supposed to look like?

linear regression lasso glmnet written 11 months ago by demoraesdiogo2017 • 10

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glmnet package lasso error

lasso multilinear regression glmnet written 22 months ago by demoraesdiogo2017 • 10

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Recent Replies

C: sequence in bam file looks weird by swbarnes2 ♦ 7.2k
A quality string with lots of G's is high quality, not low quality. What does the region look li...
A: software of single-cell RNA-seq from fastq or fasta by bioinformatics2020 • 30
I'm a little confused by your question. So you're looking for software that will take your raw si...
A: software of single-cell RNA-seq from fastq or fasta by swbarnes2 ♦ 7.2k
10XGenomics cellranger will take fastqs as input and output files that Seurat can take. But then...
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Because it is numbered by feature type (3rd column) independently, here an example: NbV1Ch01...
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What is `CER_read_count`?
C: changing ID in an existing GFF3 file by Ric • 290
What confused me on my previous commend pasted output data is that gene id is AT1G00000068467, th...
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A sliding window analysis has two components: sliding and window. "Window size" is the size of th...
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position=0; while(position< chromosome_length) { do_something_between(positi...
C: PacBio Sequel data by kristina.mahan • 50
There is two because I wanted sequencing on 2 PacBio Sequel SMRT cells. Do I use the .bam or the ...
C: sequence in bam file looks weweird by RamRS ♦ 25k
Please use the formatting bar (especially the `code` option) to present your post better. You can...
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You may want to do the conversion using a tool that 10x makes available for conversion of the rea...
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I strongly recommend restriction-free cloning like FusionHD from Takara or HiFi Assembly from NEB...

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