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<prev • 29 results • page 1 of 1 • next >
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Using ExomeDepth for GRCH38 processed samples to call CNVs
exome exomedepth grch38 cnv written 20 days ago by nkausthu • 30
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1
answer
201
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1
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Pseudogenes in the human genome annotation
human genome annotation grch38 hg38 written 3 months ago by Sergio Martínez Cuesta • 170 • updated 3 months ago by Michael Dondrup ♦ 48k
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6 follow
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Intronless genes in the human genome annotation
intronless genes grch38 hg38 annotation written 3 months ago by Sergio Martínez Cuesta • 170
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156
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Debug LiftOver Failures
ncbi remapping grch37 grch38 liftover written 5 months ago by afollette • 0
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170
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CrossMaps tool failure mapping
grch37 grch38 snp written 6 months ago by melania 2282 • 100
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BWA: Importing a third-party indexed genome
1000genomes alignment grch38 bwa written 4.5 years ago by GD • 30 • updated 6 months ago by Biostar ♦♦ 20
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1
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188
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1
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Exome data processing and variant calling based on GRCH38
variant calling grch38 alt-aware alignment written 7 months ago by nkausthu • 30 • updated 7 months ago by WouterDeCoster ♦ 45k
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Indexes NCBI GRCh38
magic blast gem 3 snap grch38 sequencing written 9 months ago by Severus Snape • 0
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Covert coordinates of a specific chromosome region from Grch38 to grch37?
grch37 grch38 convert coorodinates written 22 months ago by DanielC • 140
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Problem in converting vcf to maf using vcf2maf tools
varscan grch38 vcf2maf written 2.0 years ago by Rahil • 180
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CRAM reference registry and the GRch38 reference genome
cram bam samtools variantcalling grch38 written 2.2 years ago by Mehulsharma.253 • 10 • updated 2.2 years ago by h.mon ♦ 32k
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Effect of dbSNP build differences in variant calling
assembly grch38 dbsnp variantcalling gatk written 2.2 years ago by Mehulsharma.253 • 10
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Are reference sequences from GENCODE, Ensembl and RefSeq the same if they are called GRCh38.p10, it is just the annotation that varies?
grch38 reference genome annotations rna-seq written 3.1 years ago by amina.mcdiarmid • 0
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5 follow
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Convert SNPs from GrCh38 to 37
grch37 grch38 mapping snp written 3.4 years ago by arronslacey • 280 • updated 3.4 years ago by harold.smith.tarheel • 4.6k
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Is 'hg19' the same as 'Human Genome Reference 38' ?
genome alignment grch38 hg19 sequencing written 3.6 years ago by ycsm • 10 • updated 3.6 years ago by skim • 50
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5 follow
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CNVkit GRCh38 tumor-normal pair
wes tcga grch38 cnv bed written 3.6 years ago by plink_9857 • 50 • updated 3.6 years ago by Eric T. • 2.6k
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Different position of the same alternative locus
genome grch38 alternative loci written 4.1 years ago by ivar.grytten • 40 • updated 4.1 years ago by deanna.church • 1.1k
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What are the flanking regions in alt loci of GRCh38?
alt loci genome grch38 reference genome written 4.4 years ago by ivar.grytten • 40
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new regions in GRCh38
grch37 grch38 reference human hg19 written 4.7 years ago by skanterakis • 110
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Could not find RefSeqGene gbff data files for GRCh37 to compare genes representation with GRCh38
cosmic grch37 grch38 gbff refseqgene written 4.7 years ago by mail • 0 • updated 4.7 years ago by Denise CS • 5.1k
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Did dbSNP not get the memo about hg38 chromosome names?
grch38 hg38 written 5.2 years ago by Jeremy Leipzig ♦ 19k • updated 5.2 years ago by DG ♦ 7.2k
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21 follow
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News: The New Grch38 Human Genome Browser Has Arrived!
assembly news grch38 hg38 ucsc written 7.0 years ago by Giovanni M Dall'Olio ♦ 27k • updated 5.2 years ago by Jeremy Leipzig ♦ 19k
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News: 1000 Genomes data on GRCh38
1000 genomes news alignment grch38 alts written 5.4 years ago by fairley • 100
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Genomes in a Bottle for GRCh38
giab genomes in a bottle grch38 written 5.5 years ago by mark.fleharty • 30 • updated 5.5 years ago by Brad Chapman ♦ 9.5k
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Download unspliced RefSeq genes
gene release grch38 refseq written 6.0 years ago by Biomonika (Noolean) ♦ 3.1k
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The nucleotides on ENST00000347310 and ENST00000425614 do not agree on the same chromosomal position (67240275)
nucleotide ensembl grch38 position base written 6.3 years ago by pwg46 • 440 • updated 6.2 years ago by Biostar ♦♦ 20
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12.2% of protein coding transcripts in GRCh38.cds.all.fa (from Ensembl db) don't start with 'ATG'. Why is this?
atg ensembl grch38 transcript cds written 6.3 years ago by pwg46 • 440 • updated 6.3 years ago by Chris S. • 300
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EnsGene.txt (UCSC/hg19) and Homo_sapiens.GRCh38.76.gtf (GRCH38) positions do not match
gtf position grch38 match ucsc written 6.4 years ago by pwg46 • 440 • updated 6.3 years ago by Biostar ♦♦ 20
108
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2
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71k
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48 follow
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GRCh37/38(NCBI) vs hg19/hg38(UCSC)
ncbi grch38 hg38 ucsc written 6.4 years ago by pwg46 • 440 • updated 6.4 years ago by Denise CS • 5.1k
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