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2
votes
1
answer
208
views
1
answer
Are reference sequences from GENCODE, Ensembl and RefSeq the same if they are called GRCh38.p10, it is just the annotation that varies?
grch38 reference genome annotations rna-seq written 4 months ago by amina.mcdiarmid • 0
3
votes
2
answers
406
views
2
answers
Convert SNPs from GrCh38 to 37
grch37 grch38 mapping snp written 9 months ago by arronslacey • 220 • updated 9 months ago by harold.smith.tarheel • 4.1k
8
votes
2
answers
1.4k
views
2
answers
Is 'hg19' the same as 'Human Genome Reference 38' ?
genome alignment grch38 hg19 sequencing written 11 months ago by ycsm • 10 • updated 11 months ago by skim • 20
2
votes
1
answer
534
views
1
answer
CNVkit GRCh38 tumor-normal pair
wes tcga grch38 cnv bed written 11 months ago by plink_9857 • 40 • updated 11 months ago by Eric T. • 2.2k
2
votes
1
answer
609
views
1
answer
Different position of the same alternative locus
genome grch38 alternative loci written 17 months ago by ivar.grytten • 20 • updated 17 months ago by deanna.church • 1.1k
0
votes
0
answers
601
views
0
answers
What are the flanking regions in alt loci of GRCh38?
alt loci genome grch38 reference genome written 21 months ago by ivar.grytten • 20
2
votes
0
answers
630
views
0
answers
BWA: Importing a third-party indexed genome
1000genomes alignment grch38 bwa written 22 months ago by GD • 30
4
votes
1
answer
729
views
1
answer
new regions in GRCh38
grch37 grch38 reference human hg19 written 2.0 years ago by skanterakis • 80
1
vote
1
answer
620
views
1
answer
Could not find RefSeqGene gbff data files for GRCh37 to compare genes representation with GRCh38
cosmic grch37 grch38 gbff refseqgene written 2.1 years ago by mail • 0 • updated 2.1 years ago by Denise - Open Targets • 4.5k
5
votes
1
answer
998
views
1
answer
Did dbSNP not get the memo about hg38 chromosome names?
grch38 hg38 written 2.5 years ago by Jeremy Leipzig ♦ 17k • updated 2.5 years ago by Dan Gaston ♦ 7.0k
46
votes
5
answers
20k
views
19 follow
5
answers
News: The New Grch38 Human Genome Browser Has Arrived!
assembly news grch38 hg38 ucsc written 4.3 years ago by Giovanni M Dall'Olio ♦ 26k • updated 2.5 years ago by Jeremy Leipzig ♦ 17k
10
votes
0
answers
1.2k
views
0
answers
News: 1000 Genomes data on GRCh38
1000 genomes news alignment grch38 alts written 2.7 years ago by fairley • 100
2
votes
2
answers
1.2k
views
2
answers
Genomes in a Bottle for GRCh38
giab genomes in a bottle grch38 written 2.9 years ago by mark.fleharty • 30 • updated 2.9 years ago by Brad Chapman ♦ 9.2k
0
votes
0
answers
930
views
0
answers
Download unspliced RefSeq genes
gene release grch38 refseq written 3.3 years ago by Biomonika (Noolean) ♦ 3.0k
3
votes
1
answer
1.1k
views
1
answer
The nucleotides on ENST00000347310 and ENST00000425614 do not agree on the same chromosomal position (67240275)
nucleotide ensembl grch38 position base written 3.6 years ago by pwg46 • 330 • updated 3.6 years ago by Biostar ♦♦ 20
8
votes
2
answers
1.7k
views
2
answers
12.2% of protein coding transcripts in GRCh38.cds.all.fa (from Ensembl db) don't start with 'ATG'. Why is this?
atg ensembl grch38 transcript cds written 3.6 years ago by pwg46 • 330 • updated 3.6 years ago by Chris S. • 290
5
votes
0
answers
2.7k
views
0
answers
EnsGene.txt (UCSC/hg19) and Homo_sapiens.GRCh38.76.gtf (GRCH38) positions do not match
gtf position grch38 match ucsc written 3.8 years ago by pwg46 • 330 • updated 3.6 years ago by Biostar ♦♦ 20
83
votes
2
answers
53k
views
30 follow
2
answers
GRCh37/38(NCBI) vs hg19/hg38(UCSC)
ncbi grch38 hg38 ucsc written 3.8 years ago by pwg46 • 330 • updated 3.7 years ago by Denise - Open Targets • 4.5k
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