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2
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1
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250
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1
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CRAM reference registry and the GRch38 reference genome
cram bam samtools variantcalling grch38 written 9 weeks ago by Mehulsharma.253 • 10 • updated 9 weeks ago by h.mon ♦ 23k
0
votes
0
answers
95
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0
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Effect of dbSNP build differences in variant calling
assembly grch38 dbsnp variantcalling gatk written 10 weeks ago by Mehulsharma.253 • 10
2
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1
answer
384
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1
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Are reference sequences from GENCODE, Ensembl and RefSeq the same if they are called GRCh38.p10, it is just the annotation that varies?
grch38 reference genome annotations rna-seq written 12 months ago by amina.mcdiarmid • 0
3
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2
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1.0k
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2
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Convert SNPs from GrCh38 to 37
grch37 grch38 mapping snp written 17 months ago by arronslacey • 230 • updated 17 months ago by harold.smith.tarheel • 4.3k
8
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2
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2.9k
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2
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Is 'hg19' the same as 'Human Genome Reference 38' ?
genome alignment grch38 hg19 sequencing written 19 months ago by ycsm • 10 • updated 19 months ago by skim • 30
2
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1
answer
806
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1
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CNVkit GRCh38 tumor-normal pair
wes tcga grch38 cnv bed written 19 months ago by plink_9857 • 40 • updated 19 months ago by Eric T. • 2.3k
2
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1
answer
765
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1
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Different position of the same alternative locus
genome grch38 alternative loci written 2.1 years ago by ivar.grytten • 20 • updated 2.1 years ago by deanna.church • 1.1k
0
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0
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755
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0
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What are the flanking regions in alt loci of GRCh38?
alt loci genome grch38 reference genome written 2.4 years ago by ivar.grytten • 20
2
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0
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783
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0
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BWA: Importing a third-party indexed genome
1000genomes alignment grch38 bwa written 2.5 years ago by GD • 30
4
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1
answer
924
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1
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new regions in GRCh38
grch37 grch38 reference human hg19 written 2.7 years ago by skanterakis • 100
1
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1
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762
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1
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Could not find RefSeqGene gbff data files for GRCh37 to compare genes representation with GRCh38
cosmic grch37 grch38 gbff refseqgene written 2.7 years ago by mail • 0 • updated 2.7 years ago by Denise - Open Targets • 4.7k
5
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1
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1.2k
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1
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Did dbSNP not get the memo about hg38 chromosome names?
grch38 hg38 written 3.2 years ago by Jeremy Leipzig ♦ 18k • updated 3.2 years ago by Dan Gaston ♦ 7.1k
47
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5
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21k
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21 follow
5
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News: The New Grch38 Human Genome Browser Has Arrived!
assembly news grch38 hg38 ucsc written 5.0 years ago by Giovanni M Dall'Olio ♦ 26k • updated 3.2 years ago by Jeremy Leipzig ♦ 18k
10
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0
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1.5k
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0
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News: 1000 Genomes data on GRCh38
1000 genomes news alignment grch38 alts written 3.4 years ago by fairley • 100
2
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2
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1.4k
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2
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Genomes in a Bottle for GRCh38
giab genomes in a bottle grch38 written 3.5 years ago by mark.fleharty • 30 • updated 3.5 years ago by Brad Chapman ♦ 9.3k
0
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0
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1.1k
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0
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Download unspliced RefSeq genes
gene release grch38 refseq written 4.0 years ago by Biomonika (Noolean) ♦ 3.0k
3
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1
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1.3k
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1
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The nucleotides on ENST00000347310 and ENST00000425614 do not agree on the same chromosomal position (67240275)
nucleotide ensembl grch38 position base written 4.3 years ago by pwg46 • 340 • updated 4.2 years ago by Biostar ♦♦ 20
8
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2
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1.9k
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2
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12.2% of protein coding transcripts in GRCh38.cds.all.fa (from Ensembl db) don't start with 'ATG'. Why is this?
atg ensembl grch38 transcript cds written 4.3 years ago by pwg46 • 340 • updated 4.3 years ago by Chris S. • 290
5
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0
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3.1k
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0
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EnsGene.txt (UCSC/hg19) and Homo_sapiens.GRCh38.76.gtf (GRCH38) positions do not match
gtf position grch38 match ucsc written 4.4 years ago by pwg46 • 340 • updated 4.3 years ago by Biostar ♦♦ 20
87
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2
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60k
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31 follow
2
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GRCh37/38(NCBI) vs hg19/hg38(UCSC)
ncbi grch38 hg38 ucsc written 4.4 years ago by pwg46 • 340 • updated 4.3 years ago by Denise - Open Targets • 4.7k
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