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4
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571
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Herald: The Biostar Herald for Monday, October 09, 2023
herald
written 7 months ago by 2.8k
4
votes
1
reply
762
views
Herald: The Biostar Herald for Monday, August 28, 2023
herald
updated 8 months ago by ▴ 770 • written 8 months ago by 2.8k
2
votes
1
reply
464
views
Herald: The Biostar Herald for Tuesday, December 19, 2023
herald
updated 4 months ago by ★ 3.8k • written 4 months ago by 2.8k
1
vote
1
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246
views
Herald: The Biostar Herald for Tuesday, April 23, 2024
herald
updated 21 days ago by 161k • written 21 days ago by 2.8k
1
vote
0
replies
246
views
Herald: The Biostar Herald for Tuesday, February 20, 2024
herald
12 weeks ago by Biostar 2.8k
1
vote
0
replies
844
views
Herald: The Biostar Herald for Tuesday, May 23, 2023
herald
11 months ago by Biostar 2.8k
6
votes
0
replies
220
views
Herald: The Biostar Herald for Monday, April 15, 2024
herald
29 days ago by Biostar 2.8k
1
vote
0
replies
299
views
Herald: The Biostar Herald for Monday, January 15, 2024
herald
4 months ago by Biostar 2.8k
3
votes
0
replies
514
views
Herald: The Biostar Herald for Tuesday, September 26, 2023
herald
7 months ago by Biostar 2.8k
2
votes
0
replies
163
views
Herald: The Biostar Herald for Monday, May 06, 2024
herald
8 days ago by Biostar 2.8k
2
votes
0
replies
274
views
Herald: The Biostar Herald for Monday, February 12, 2024
herald
3 months ago by Biostar 2.8k
3
votes
0
replies
310
views
Herald: The Biostar Herald for Monday, January 22, 2024
herald
3 months ago by Biostar 2.8k
4
votes
0
replies
505
views
Herald: The Biostar Herald for Wednesday, September 06, 2023
herald
8 months ago by Biostar 2.8k
2
votes
0
replies
1.1k
views
Herald: The Biostar Herald for Thursday, June 15, 2023
herald
11 months ago by Biostar 2.8k
3
votes
0
replies
461
views
Herald: The Biostar Herald for Monday, October 16, 2023
herald
7 months ago by Biostar 2.8k
3
votes
0
replies
386
views
Herald: The Biostar Herald for Monday, November 27, 2023
herald
5 months ago by Biostar 2.8k
1
vote
0
replies
295
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Herald: The Biostar Herald for Wednesday, January 31, 2024
herald
3 months ago by Biostar 2.8k
3
votes
0
replies
232
views
Herald: The Biostar Herald for Monday, March 11, 2024
herald
9 weeks ago by Biostar 2.8k
4
votes
0
replies
151
views
Herald: The Biostar Herald for Monday, April 29, 2024
herald
15 days ago by Biostar 2.8k
3
votes
0
replies
189
views
Herald: The Biostar Herald for Tuesday, April 09, 2024
herald
5 weeks ago by Biostar 2.8k
1
vote
0
replies
807
views
Herald: The Biostar Herald for Wednesday, August 02, 2023
herald
9 months ago by Biostar 2.8k
2
votes
0
replies
337
views
Herald: The Biostar Herald for Monday, January 08, 2024
herald
4 months ago by Biostar 2.8k
2
votes
0
replies
381
views
Herald: The Biostar Herald for Monday, December 04, 2023
herald
5 months ago by Biostar 2.8k
4
votes
0
replies
560
views
Herald: The Biostar Herald for Wednesday, September 20, 2023
herald
7 months ago by Biostar 2.8k
4
votes
0
replies
314
views
Herald: The Biostar Herald for Monday, February 26, 2024
herald
11 weeks ago by Biostar 2.8k
4
votes
0
replies
376
views
Herald: The Biostar Herald for Monday, December 11, 2023
herald
5 months ago by Biostar 2.8k
3
votes
0
replies
409
views
Herald: The Biostar Herald for Monday, November 13, 2023
herald
6 months ago by Biostar 2.8k
2
votes
0
replies
456
views
Herald: The Biostar Herald for Monday, October 30, 2023
herald
6 months ago by Biostar 2.8k
3
votes
0
replies
227
views
Herald: The Biostar Herald for Monday, March 25, 2024
herald
7 weeks ago by Biostar 2.8k
2
votes
0
replies
778
views
Herald: The Biostar Herald for Monday, June 05, 2023
herald
11 months ago by Biostar 2.8k
2
votes
0
replies
125
views
Herald: The Biostar Herald for Monday, May 13, 2024
herald
1 day ago by Biostar 2.8k
1
vote
0
replies
207
views
Herald: The Biostar Herald for Wednesday, April 03, 2024
herald
5 weeks ago by Biostar 2.8k
3
votes
0
replies
423
views
Herald: The Biostar Herald for Monday, November 20, 2023
herald
5 months ago by Biostar 2.8k
2
votes
0
replies
497
views
Herald: The Biostar Herald for Monday, October 23, 2023
herald
6 months ago by Biostar 2.8k
2
votes
0
replies
694
views
Herald: The Biostar Herald for Wednesday, August 09, 2023
herald
9 months ago by Biostar 2.8k
1
vote
0
replies
617
views
Herald: The Biostar Herald for Thursday, August 24, 2023
herald
8 months ago by Biostar 2.8k
4
votes
0
replies
438
views
Herald: The Biostar Herald for Monday, November 06, 2023
herald
6 months ago by Biostar 2.8k
37 results • Page 1 of 1
Recent Votes
Comment: Overlapping Ranges within Granges object
Answer: Difference between Genotype 0|1 and 1|0 in VCF file?
Answer: how to keep reads in a fasta file based on a seq id list in R?
Answer: The total expressed genes in RNA-Seq data
C: Re-arrange conditions in Seurat
Genome Visualization Tools
Answer: Genome Visualization Tools
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Popular Question to mbrav005 • 0
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Recent Replies
Comment: Polish a large genome with Pilon by sansan_96 ▴ 90
..........
Comment: Overlapping Ranges within Granges object by ntsopoul ▴ 60
you are on to something… if I use reduce to find the “overlaping regions” in a secon GRanges object, what do I do next?
Comment: Using ggplotly in R by jen ▴ 10
Thank you Jared for your response. I took a look at the documentation you provided and am trying my best to follow along, but can't seem to…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Juke34 8.6k
Right I heard there is an issue since Perl v5.36. You may have better luck using conda. Or the best way is to use the container. Or downgra…
Answer: Alphaphold 3 pLDDT coloring scheme in chimerax? by Mensur Dlakic ★ 27k
pLDDT scores are stored in the so-called B-factor column in PDB files. Below the `File` ribbon select `Molecule Display` and click on `b-fa…
Comment: Genome Visualization Tools by dlera.lozano ▴ 10
Thank you so much
Answer: Doubt about the process of annotation, detection, identification and classificat by Mensur Dlakic ★ 27k
Depends on the context. `TE detection` and `TE identification` could mean the same thing if they refer to presence/absence of TEs. `TE iden…
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr by Ram 43k
Please accept your own answer to mark the post as solved.
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file by Ram 43k
A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file by Prawesh • 0
thanks, it's working now.
Answer: Genome Visualization Tools by GenoMax 142k
@cmdcolin has a great list here: https://github.com/cmdcolin/awesome-genome-visualization
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file by Trivas ★ 1.8k
You need to have indexed your bam/sam file using `samtools index`
Answer: Using ggplotly in R by jared.andrews07 ★ 16k
The simple answer is to plot it natively with plotly rather than use `ggplotly`. See [this stackoverflow answer](https://stackoverflow.com/…
Comment: Why does assigning genes with biomart give me different values than using a tran by GenoMax 142k
According to HUGO there is only one [**ZSCAN2 gene**][1] and it points to the first Ensembl gene ID (ENSG00000176371). Ensembl is annotatin…
Answer: RNAseq RNA content by noodle ▴ 580
There are many tools for this. I recommend [gatk (picard) CollectRnaSeqMetrics][1] or alternatively [RSeQC][2] and then run [multiqc][3…
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