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37 results • Page
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2
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Herald:
The Biostar Herald for Thursday, June 15, 2023
herald
11 months ago by
Biostar
2.8k
1
vote
0
replies
846
views
Herald:
The Biostar Herald for Tuesday, May 23, 2023
herald
11 months ago by
Biostar
2.8k
1
vote
0
replies
807
views
Herald:
The Biostar Herald for Wednesday, August 02, 2023
herald
9 months ago by
Biostar
2.8k
2
votes
0
replies
779
views
Herald:
The Biostar Herald for Monday, June 05, 2023
herald
11 months ago by
Biostar
2.8k
4
votes
1
reply
763
views
Herald:
The Biostar Herald for Monday, August 28, 2023
herald
updated 8 months ago by
Jesse
▴ 770 • written 8 months ago by
Biostar
2.8k
2
votes
0
replies
697
views
Herald:
The Biostar Herald for Wednesday, August 09, 2023
herald
9 months ago by
Biostar
2.8k
1
vote
0
replies
619
views
Herald:
The Biostar Herald for Thursday, August 24, 2023
herald
8 months ago by
Biostar
2.8k
4
votes
1
reply
574
views
Herald:
The Biostar Herald for Monday, October 09, 2023
herald
written 7 months ago by
Biostar
2.8k
4
votes
0
replies
562
views
Herald:
The Biostar Herald for Wednesday, September 20, 2023
herald
7 months ago by
Biostar
2.8k
3
votes
0
replies
519
views
Herald:
The Biostar Herald for Tuesday, September 26, 2023
herald
7 months ago by
Biostar
2.8k
4
votes
0
replies
510
views
Herald:
The Biostar Herald for Wednesday, September 06, 2023
herald
8 months ago by
Biostar
2.8k
2
votes
0
replies
500
views
Herald:
The Biostar Herald for Monday, October 23, 2023
herald
6 months ago by
Biostar
2.8k
2
votes
1
reply
470
views
Herald:
The Biostar Herald for Tuesday, December 19, 2023
herald
updated 4 months ago by
cmdcolin
★ 3.8k • written 4 months ago by
Biostar
2.8k
3
votes
0
replies
463
views
Herald:
The Biostar Herald for Monday, October 16, 2023
herald
7 months ago by
Biostar
2.8k
2
votes
0
replies
459
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Herald:
The Biostar Herald for Monday, October 30, 2023
herald
6 months ago by
Biostar
2.8k
4
votes
0
replies
442
views
Herald:
The Biostar Herald for Monday, November 06, 2023
herald
6 months ago by
Biostar
2.8k
3
votes
0
replies
427
views
Herald:
The Biostar Herald for Monday, November 20, 2023
herald
5 months ago by
Biostar
2.8k
3
votes
0
replies
414
views
Herald:
The Biostar Herald for Monday, November 13, 2023
herald
6 months ago by
Biostar
2.8k
3
votes
0
replies
388
views
Herald:
The Biostar Herald for Monday, November 27, 2023
herald
5 months ago by
Biostar
2.8k
2
votes
0
replies
385
views
Herald:
The Biostar Herald for Monday, December 04, 2023
herald
5 months ago by
Biostar
2.8k
4
votes
0
replies
382
views
Herald:
The Biostar Herald for Monday, December 11, 2023
herald
5 months ago by
Biostar
2.8k
2
votes
0
replies
341
views
Herald:
The Biostar Herald for Monday, January 08, 2024
herald
4 months ago by
Biostar
2.8k
4
votes
0
replies
318
views
Herald:
The Biostar Herald for Monday, February 26, 2024
herald
11 weeks ago by
Biostar
2.8k
3
votes
0
replies
315
views
Herald:
The Biostar Herald for Monday, January 22, 2024
herald
3 months ago by
Biostar
2.8k
1
vote
0
replies
302
views
Herald:
The Biostar Herald for Monday, January 15, 2024
herald
4 months ago by
Biostar
2.8k
1
vote
0
replies
298
views
Herald:
The Biostar Herald for Wednesday, January 31, 2024
herald
3 months ago by
Biostar
2.8k
2
votes
0
replies
278
views
Herald:
The Biostar Herald for Monday, February 12, 2024
herald
3 months ago by
Biostar
2.8k
1
vote
1
reply
249
views
Herald:
The Biostar Herald for Tuesday, April 23, 2024
herald
updated 22 days ago by
Pierre Lindenbaum
161k • written 22 days ago by
Biostar
2.8k
1
vote
0
replies
248
views
Herald:
The Biostar Herald for Tuesday, February 20, 2024
herald
12 weeks ago by
Biostar
2.8k
3
votes
0
replies
236
views
Herald:
The Biostar Herald for Monday, March 11, 2024
herald
9 weeks ago by
Biostar
2.8k
3
votes
0
replies
233
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Herald:
The Biostar Herald for Monday, March 25, 2024
herald
7 weeks ago by
Biostar
2.8k
6
votes
0
replies
225
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Herald:
The Biostar Herald for Monday, April 15, 2024
herald
4 weeks ago by
Biostar
2.8k
1
vote
0
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211
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Herald:
The Biostar Herald for Wednesday, April 03, 2024
herald
6 weeks ago by
Biostar
2.8k
3
votes
0
replies
194
views
Herald:
The Biostar Herald for Tuesday, April 09, 2024
herald
5 weeks ago by
Biostar
2.8k
2
votes
0
replies
165
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
10 days ago by
Biostar
2.8k
4
votes
0
replies
157
views
Herald:
The Biostar Herald for Monday, April 29, 2024
herald
17 days ago by
Biostar
2.8k
2
votes
0
replies
137
views
Herald:
The Biostar Herald for Monday, May 13, 2024
herald
2 days ago by
Biostar
2.8k
37 results • Page
1 of 1
Recent Votes
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
Answer: Concatenate multiple paired-end reads or interleaved which is best approach to a
Scale total height phylogenetic tree
Scale total height phylogenetic tree
Comment: finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
Answer: finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame
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Recent Replies
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
by
Jeremy Leipzig
22k
We get this question like clockwork every 6 weeks. I'll say it one more time: **A freeze is a freeze.** Patches are not a thing th…
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
ev97
▴ 20
Thanks very much for your feedback! I will take all those things in consideration once I start the analysis! Just out of curiosity, do yo…
Answer: getting exon coordinates
by
ben@f
▴ 10
A combination of bash and awk can do the work, suppose you have the gff file annotation of your gene of interest and a text file with Gene…
Comment: getting exon coordinates
by
Pierre Lindenbaum
161k
https://www.biostars.org/p/385786/ ; <br> https://www.biostars.org/p/276608/ ; <br> https://www.biostars.org/p/411934/ ;etc... <!-- How …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
GenoMax
142k
I would have thought `needle` from EMBOSS would be the option to use.
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
marco.barr
▴ 120
ok, then you should add the donor information to the PCA analysis. First create a separate dataframe for the donors, then add with `factor`…
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
b.contreras.moreira
▴ 180
If you are willing to do some coding I think <https://github.com/smarco/WFA2-lib> is among the fastest global aligners, the repo has C++ ex…
Comment: finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame
by
GenoMax
142k
There is an API that you could try: https://www.ebi.ac.uk/pride/markdownpage/prideutilities
Comment: finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame
by
Pierre Lindenbaum
161k
thanks. looks interesting but it's broken. the Firefox console shows a 404 for https://www.ebi.ac.uk/pride/ws/archive/v2/peptidesummary?ke…
Answer: finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame
by
GenoMax
142k
Perhaps: https://www.ebi.ac.uk/pride/peptidome/ This site is very slow. Almost to the point of being not usable. My search with your pepti…
Comment: Can I perform a correlation test with 3 biological replicates per condition?
by
ATpoint
82k
You're welcome. Yes, unfortunately you need quite a sample size for WGCNA simply because correlations with few samples are vastly underpowe…
Comment: Can I perform a correlation test with 3 biological replicates per condition?
by
manuelmourato25
• 0
Ah, I see. So seen that what I want is the per-gene correlation, the minimum of 20/25 for the pearson correlation still applies. Thank you …
Answer: Can I perform a correlation test with 3 biological replicates per condition?
by
ATpoint
82k
I think you're misunderstanding some concepts here. WGCNA is a framework that defines modules based on how and which genes are correlated …
Comment: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
by
GenoMax
142k
> most up-to-date build Major build of the genome remains GRCh38. What you are looking at is the latest patch release for that build. Only…
Comment: Can I perform a correlation test with 3 biological replicates per condition?
by
manuelmourato25
• 0
Thank you @atpoint . My apologies, maybe I should rephrase the question. I read the WGCNA docs already, and for the Pearson correlation tes…
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