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Herald: The Biostar Herald for Monday, April 15, 2024
herald
28 days ago by Biostar 2.7k
4
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0
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557
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Herald: The Biostar Herald for Wednesday, September 20, 2023
herald
7 months ago by Biostar 2.7k
4
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1
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760
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Herald: The Biostar Herald for Monday, August 28, 2023
herald
updated 8 months ago by ▴ 770 • written 8 months ago by 2.7k
4
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435
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Herald: The Biostar Herald for Monday, November 06, 2023
herald
6 months ago by Biostar 2.7k
4
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1
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567
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Herald: The Biostar Herald for Monday, October 09, 2023
herald
written 7 months ago by 2.7k
4
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0
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504
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Herald: The Biostar Herald for Wednesday, September 06, 2023
herald
8 months ago by Biostar 2.7k
4
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373
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Herald: The Biostar Herald for Monday, December 11, 2023
herald
5 months ago by Biostar 2.7k
4
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0
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149
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Herald: The Biostar Herald for Monday, April 29, 2024
herald
14 days ago by Biostar 2.7k
4
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0
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311
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Herald: The Biostar Herald for Monday, February 26, 2024
herald
11 weeks ago by Biostar 2.7k
3
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0
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510
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Herald: The Biostar Herald for Tuesday, September 26, 2023
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7 months ago by Biostar 2.7k
3
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458
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Herald: The Biostar Herald for Monday, October 16, 2023
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7 months ago by Biostar 2.7k
3
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384
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Herald: The Biostar Herald for Monday, November 27, 2023
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5 months ago by Biostar 2.7k
3
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228
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Herald: The Biostar Herald for Monday, March 11, 2024
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9 weeks ago by Biostar 2.7k
3
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0
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186
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Herald: The Biostar Herald for Tuesday, April 09, 2024
herald
4 weeks ago by Biostar 2.7k
3
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407
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Herald: The Biostar Herald for Monday, November 13, 2023
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6 months ago by Biostar 2.7k
3
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420
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Herald: The Biostar Herald for Monday, November 20, 2023
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5 months ago by Biostar 2.7k
3
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308
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Herald: The Biostar Herald for Monday, January 22, 2024
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3 months ago by Biostar 2.7k
3
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225
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Herald: The Biostar Herald for Monday, March 25, 2024
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7 weeks ago by Biostar 2.7k
2
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496
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Herald: The Biostar Herald for Monday, October 23, 2023
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6 months ago by Biostar 2.7k
2
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694
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Herald: The Biostar Herald for Wednesday, August 09, 2023
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9 months ago by Biostar 2.7k
2
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157
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Herald: The Biostar Herald for Monday, May 06, 2024
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7 days ago by Biostar 2.7k
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0
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271
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Herald: The Biostar Herald for Monday, February 12, 2024
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3 months ago by Biostar 2.7k
2
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0
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1.1k
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Herald: The Biostar Herald for Thursday, June 15, 2023
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11 months ago by Biostar 2.7k
2
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1
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461
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Herald: The Biostar Herald for Tuesday, December 19, 2023
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updated 4 months ago by ★ 3.8k • written 4 months ago by 2.7k
2
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335
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Herald: The Biostar Herald for Monday, January 08, 2024
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4 months ago by Biostar 2.7k
2
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0
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453
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Herald: The Biostar Herald for Monday, October 30, 2023
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6 months ago by Biostar 2.7k
2
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0
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775
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Herald: The Biostar Herald for Monday, June 05, 2023
herald
11 months ago by Biostar 2.7k
2
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0
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378
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Herald: The Biostar Herald for Monday, December 04, 2023
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5 months ago by Biostar 2.7k
1
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0
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200
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Herald: The Biostar Herald for Wednesday, April 03, 2024
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5 weeks ago by Biostar 2.7k
1
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0
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297
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Herald: The Biostar Herald for Monday, January 15, 2024
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3 months ago by Biostar 2.7k
1
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0
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844
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Herald: The Biostar Herald for Tuesday, May 23, 2023
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11 months ago by Biostar 2.7k
1
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1
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242
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Herald: The Biostar Herald for Tuesday, April 23, 2024
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updated 20 days ago by 161k • written 20 days ago by 2.7k
1
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0
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614
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Herald: The Biostar Herald for Thursday, August 24, 2023
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8 months ago by Biostar 2.7k
1
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0
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293
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Herald: The Biostar Herald for Wednesday, January 31, 2024
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3 months ago by Biostar 2.7k
1
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0
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806
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Herald: The Biostar Herald for Wednesday, August 02, 2023
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9 months ago by Biostar 2.7k
1
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0
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244
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Herald: The Biostar Herald for Tuesday, February 20, 2024
herald
11 weeks ago by Biostar 2.7k
0
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0
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64
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Herald: The Biostar Herald for Monday, May 13, 2024
herald
10 hours ago by Biostar 2.7k
37 results • Page 1 of 1
Recent Votes
Comment: Kraken2 database
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
A: Filtering of VCF, INFO DP or FORMAT DP
What is the difference between GRCh37 and hs37? And hg19?
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Recent Replies
Comment: What does the 'E%' represent in BUSCO results? by Philipp Bayer 8.4k
funny enough i tried the same thing (i've used BUSCO heaps times but never saw the E:! even the manual lists 'C:89.0%[S:85.8%,D:3.2%],F:6.9…
Comment: What does the 'E%' represent in BUSCO results? by GenoMax 142k
According to ChatGPT: In BUSCO, the "E" category represents "End" or "Endof" gene fragments. These are orthologous groups for which the ge…
Comment: Help with IGV abbreviation by GeneC • 0
Thank you for the link and details
Comment: Help with IGV abbreviation by GeneC • 0
Thank you very much for helping with the details.
Comment: How does gene length effect the number of reads mapped by Chen • 0
thank you :)
Answer: Filtering based on alternate allelic balance by Arton • 0
I found the answer when using bcftools. Is there is a way to do this with FilterVcf? bcftools filter --include '(FMT/AD[0:1])/(FMT/A…
Comment: Help with IGV abbreviation by GenoMax 142k
Those are SAM format fields. Check section 1.4 here: https://samtools.github.io/hts-specs/SAMv1.pdf > 1:2114:12111:13792 That is part of …
Answer: Help with IGV abbreviation by Mathew ▴ 130
Hi, here is a breakdown of each part that you asked about: **flag 99**: This indicates various properties of the read alignment. In this c…
Comment: Kraken2 database by Mathew ▴ 130
I don't see any databases with just pathogenic bacteria genomes from just a quick search, I would imagine that using the Standard-16 databa…
Comment: Galaxy StringTie error by Mathew ▴ 130
I am not sure if this is true for Galaxy, but when I code in Python, SyntaxWarning: invalid escape sequence '' occurs when you want to add …
Comment: Can diamond prepdb be used to make a taxonomically aware database? by GenoMax 142k
Should be possible: https://www.biostars.org/p/430366/ Are you using an older version of `diamond`? Latest versions of `diamond` can use N…
Comment: SNPEff database building error by Fungal genetics • 0
Hi, Below SNPEff database building error I am getting. "FATAL ERROR: Most Exons do not have sequences!" The headers are correct and sam…
Comment: Extracting named fasta sequences according to list with Biopython by Rubayetul • 0
the last line of SeqIO.write(record.....'fasta') in a for loop will input the the last record into new fasta file and it will only contain …
Comment: How to process Bulk WES data? by GenoMax 142k
You could use `sarek` (nf-core's exome pipeline) if you don't want to customize or reinvent : https://nf-co.re/sarek/3.4.2
Comment: Empty .best and .sing2 Files After Running Demuxlet by Ram 43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
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