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126 results • Page
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Herald:
The Biostar Herald for Monday, October 23, 2023
herald
6 months ago by
Biostar
2.8k
2
votes
1
reply
471
views
Herald:
The Biostar Herald for Tuesday, December 19, 2023
herald
updated 4 months ago by
cmdcolin
★ 3.8k • written 4 months ago by
Biostar
2.8k
3
votes
0
replies
463
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Herald:
The Biostar Herald for Monday, October 16, 2023
herald
7 months ago by
Biostar
2.8k
2
votes
0
replies
459
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Herald:
The Biostar Herald for Monday, October 30, 2023
herald
6 months ago by
Biostar
2.8k
4
votes
0
replies
442
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Herald:
The Biostar Herald for Monday, November 06, 2023
herald
6 months ago by
Biostar
2.8k
3
votes
0
replies
428
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Herald:
The Biostar Herald for Monday, November 20, 2023
herald
5 months ago by
Biostar
2.8k
3
votes
0
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414
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Herald:
The Biostar Herald for Monday, November 13, 2023
herald
6 months ago by
Biostar
2.8k
3
votes
0
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388
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Herald:
The Biostar Herald for Monday, November 27, 2023
herald
5 months ago by
Biostar
2.8k
2
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0
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385
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Herald:
The Biostar Herald for Monday, December 04, 2023
herald
5 months ago by
Biostar
2.8k
4
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0
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382
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Herald:
The Biostar Herald for Monday, December 11, 2023
herald
5 months ago by
Biostar
2.8k
2
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0
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342
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Herald:
The Biostar Herald for Monday, January 08, 2024
herald
4 months ago by
Biostar
2.8k
4
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318
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Herald:
The Biostar Herald for Monday, February 26, 2024
herald
11 weeks ago by
Biostar
2.8k
3
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315
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Herald:
The Biostar Herald for Monday, January 22, 2024
herald
3 months ago by
Biostar
2.8k
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302
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Herald:
The Biostar Herald for Monday, January 15, 2024
herald
4 months ago by
Biostar
2.8k
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298
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Herald:
The Biostar Herald for Wednesday, January 31, 2024
herald
3 months ago by
Biostar
2.8k
2
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278
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Herald:
The Biostar Herald for Monday, February 12, 2024
herald
3 months ago by
Biostar
2.8k
1
vote
1
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249
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Herald:
The Biostar Herald for Tuesday, April 23, 2024
herald
updated 22 days ago by
Pierre Lindenbaum
161k • written 22 days ago by
Biostar
2.8k
1
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0
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248
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Herald:
The Biostar Herald for Tuesday, February 20, 2024
herald
12 weeks ago by
Biostar
2.8k
3
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0
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236
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Herald:
The Biostar Herald for Monday, March 11, 2024
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9 weeks ago by
Biostar
2.8k
3
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233
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Herald:
The Biostar Herald for Monday, March 25, 2024
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7 weeks ago by
Biostar
2.8k
6
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225
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Herald:
The Biostar Herald for Monday, April 15, 2024
herald
4 weeks ago by
Biostar
2.8k
1
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0
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211
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Herald:
The Biostar Herald for Wednesday, April 03, 2024
herald
6 weeks ago by
Biostar
2.8k
3
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0
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194
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Herald:
The Biostar Herald for Tuesday, April 09, 2024
herald
5 weeks ago by
Biostar
2.8k
2
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0
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165
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Herald:
The Biostar Herald for Monday, May 06, 2024
herald
10 days ago by
Biostar
2.8k
4
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0
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157
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Herald:
The Biostar Herald for Monday, April 29, 2024
herald
17 days ago by
Biostar
2.8k
2
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0
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138
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Herald:
The Biostar Herald for Monday, May 13, 2024
herald
3 days ago by
Biostar
2.8k
126 results • Page
3 of 3
Recent Votes
A: How count reads
Answer: Probe annotation file for microarray platform MoGene-1_0-st-v1
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
C: Splitting .vcf file
Answer: Grouping datasets in Seurat
Answer: How should I make kallisto indexes?
Comment: Why does assigning genes with biomart give me different values than using a tran
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Recent Awards •
All
Popular Question
to
carlopecoraro2
★ 2.5k
Scholar
to
GenoMax
142k
Popular Question
to
ben@f
▴ 20
Popular Question
to
Jalil Sharif
▴ 80
Popular Question
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biology_inform
▴ 50
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nd48
▴ 20
Teacher
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aw7
▴ 300
Recent Replies
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
▴ 10
Ok, I will response to you here as soon as possible.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
How much memory do you have available? For `nt` database you are going to need 30-40G minimum. You may simply be running out of memory.
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
ev97
▴ 20
Noted! Thanks very much for your help!
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i'm using linux. I was use 3 file.fasta to debug and it is nucleotide file, and my blast -h still work > (/data/quyho/tools/mgs2amr_tool…
Answer: Details on salmon index
by
Rob
6.5k
Hi Lorenzo, Thanks for your question. First, I'd like to clarify that several substantial updates have been made to salmon since its …
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
yura.grabovska
▴ 90
sc/snRNASeq tends to have differences in things like mitochondrial genes etc, which you can account for using tools like SCTransform but in…
Comment: Why does assigning genes with biomart give me different values than using a tran
by
bioinfo
▴ 150
Thank you! I ended up using the transcripts_to_genes instead of biomart.
Comment: How can I calculate the OS of each patient?
by
ATpoint
82k
Please be specific. Which TCGA subset, what did you try? Show code.
Answer: mitochondrial genome assembly pipeline
by
shelkmike
★ 1.2k
A good tool for mitochondrial genome assembly is GetOrganelle (https://github.com/Kinggerm/GetOrganelle)
Comment: getting exon coordinates
by
Ram
43k
Please do not use `bioinformatics` as a tag unless your post in about the field of bioinformatics itself.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Ram
43k
I've removed unneccessary tags - `meta` and `how-to` don't apply to this post at all, and the `forum` tag is not in use anymore.
Comment: Difference in number of reads when using duplex and simplex base calling with Do
by
GenoMax
142k
I assume you have posted this in nanopore community and/or on the dorado issues page on GitHub. Please come back and post an update once yo…
Comment: Annotating file using bcftools
by
kl
▴ 10
Do you know if there is a way to leave chr:pos in ID if there is no matching rsid based on chromosome and position, as variants have been r…
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
by
Jeremy Leipzig
22k
We get this question like clockwork every 6 weeks. I'll say it one more time: **A freeze is a freeze.** Patches are not a thing th…
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
ev97
▴ 20
Thanks very much for your feedback! I will take all those things in consideration once I start the analysis! Just out of curiosity, do yo…
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