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37 results • Page
1 of 1
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6
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222
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Herald:
The Biostar Herald for Monday, April 15, 2024
herald
4 weeks ago by
Biostar
2.8k
4
votes
0
replies
506
views
Herald:
The Biostar Herald for Wednesday, September 06, 2023
herald
8 months ago by
Biostar
2.8k
4
votes
0
replies
377
views
Herald:
The Biostar Herald for Monday, December 11, 2023
herald
5 months ago by
Biostar
2.8k
4
votes
0
replies
439
views
Herald:
The Biostar Herald for Monday, November 06, 2023
herald
6 months ago by
Biostar
2.8k
4
votes
0
replies
316
views
Herald:
The Biostar Herald for Monday, February 26, 2024
herald
11 weeks ago by
Biostar
2.8k
4
votes
0
replies
561
views
Herald:
The Biostar Herald for Wednesday, September 20, 2023
herald
7 months ago by
Biostar
2.8k
4
votes
1
reply
762
views
Herald:
The Biostar Herald for Monday, August 28, 2023
herald
updated 8 months ago by
Jesse
▴ 770 • written 8 months ago by
Biostar
2.8k
4
votes
1
reply
573
views
Herald:
The Biostar Herald for Monday, October 09, 2023
herald
written 7 months ago by
Biostar
2.8k
4
votes
0
replies
153
views
Herald:
The Biostar Herald for Monday, April 29, 2024
herald
16 days ago by
Biostar
2.8k
3
votes
0
replies
424
views
Herald:
The Biostar Herald for Monday, November 20, 2023
herald
5 months ago by
Biostar
2.8k
3
votes
0
replies
516
views
Herald:
The Biostar Herald for Tuesday, September 26, 2023
herald
7 months ago by
Biostar
2.8k
3
votes
0
replies
312
views
Herald:
The Biostar Herald for Monday, January 22, 2024
herald
3 months ago by
Biostar
2.8k
3
votes
0
replies
461
views
Herald:
The Biostar Herald for Monday, October 16, 2023
herald
7 months ago by
Biostar
2.8k
3
votes
0
replies
387
views
Herald:
The Biostar Herald for Monday, November 27, 2023
herald
5 months ago by
Biostar
2.8k
3
votes
0
replies
232
views
Herald:
The Biostar Herald for Monday, March 11, 2024
herald
9 weeks ago by
Biostar
2.8k
3
votes
0
replies
190
views
Herald:
The Biostar Herald for Tuesday, April 09, 2024
herald
5 weeks ago by
Biostar
2.8k
3
votes
0
replies
412
views
Herald:
The Biostar Herald for Monday, November 13, 2023
herald
6 months ago by
Biostar
2.8k
3
votes
0
replies
229
views
Herald:
The Biostar Herald for Monday, March 25, 2024
herald
7 weeks ago by
Biostar
2.8k
2
votes
0
replies
499
views
Herald:
The Biostar Herald for Monday, October 23, 2023
herald
6 months ago by
Biostar
2.8k
2
votes
0
replies
340
views
Herald:
The Biostar Herald for Monday, January 08, 2024
herald
4 months ago by
Biostar
2.8k
2
votes
0
replies
697
views
Herald:
The Biostar Herald for Wednesday, August 09, 2023
herald
9 months ago by
Biostar
2.8k
2
votes
0
replies
275
views
Herald:
The Biostar Herald for Monday, February 12, 2024
herald
3 months ago by
Biostar
2.8k
2
votes
0
replies
164
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
9 days ago by
Biostar
2.8k
2
votes
0
replies
1.1k
views
Herald:
The Biostar Herald for Thursday, June 15, 2023
herald
11 months ago by
Biostar
2.8k
2
votes
1
reply
464
views
Herald:
The Biostar Herald for Tuesday, December 19, 2023
herald
updated 4 months ago by
cmdcolin
★ 3.8k • written 4 months ago by
Biostar
2.8k
2
votes
0
replies
457
views
Herald:
The Biostar Herald for Monday, October 30, 2023
herald
6 months ago by
Biostar
2.8k
2
votes
0
replies
383
views
Herald:
The Biostar Herald for Monday, December 04, 2023
herald
5 months ago by
Biostar
2.8k
2
votes
0
replies
778
views
Herald:
The Biostar Herald for Monday, June 05, 2023
herald
11 months ago by
Biostar
2.8k
2
votes
0
replies
135
views
Herald:
The Biostar Herald for Monday, May 13, 2024
herald
1 day ago by
Biostar
2.8k
1
vote
0
replies
296
views
Herald:
The Biostar Herald for Wednesday, January 31, 2024
herald
3 months ago by
Biostar
2.8k
1
vote
0
replies
246
views
Herald:
The Biostar Herald for Tuesday, February 20, 2024
herald
12 weeks ago by
Biostar
2.8k
1
vote
1
reply
248
views
Herald:
The Biostar Herald for Tuesday, April 23, 2024
herald
updated 21 days ago by
Pierre Lindenbaum
161k • written 21 days ago by
Biostar
2.8k
1
vote
0
replies
618
views
Herald:
The Biostar Herald for Thursday, August 24, 2023
herald
8 months ago by
Biostar
2.8k
1
vote
0
replies
807
views
Herald:
The Biostar Herald for Wednesday, August 02, 2023
herald
9 months ago by
Biostar
2.8k
1
vote
0
replies
301
views
Herald:
The Biostar Herald for Monday, January 15, 2024
herald
4 months ago by
Biostar
2.8k
1
vote
0
replies
207
views
Herald:
The Biostar Herald for Wednesday, April 03, 2024
herald
6 weeks ago by
Biostar
2.8k
1
vote
0
replies
844
views
Herald:
The Biostar Herald for Tuesday, May 23, 2023
herald
11 months ago by
Biostar
2.8k
37 results • Page
1 of 1
Recent Votes
Answer: Cannot install bwa-mem2 via conda
Answer: Sub-sampling a BAM to a fixed number of reads
Comment: Downsample BAM file to specific amount of reads
Answer: Long reads and fixing of mate-pair issues/marking duplicates with samtools
Answer: Long reads and fixing of mate-pair issues/marking duplicates with samtools
Answer: genome finishing
Answer: genome finishing
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Recent Awards •
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Popular Question
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asalimih
▴ 60
Popular Question
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nd48
▴ 20
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Trivas
★ 1.8k
Popular Question
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biology_inform
▴ 50
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Joe
21k
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yura.grabovska
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Istvan Albert
100k
Recent Replies
Comment: Duplicated reads (IDs) from nanopore sequencing
by
GenoMax
142k
If you only have supplementary alignments then they may be caused by reasons mentioned here --> https://www.biostars.org/p/308853/ I did no…
Comment: Cannot install bwa-mem2 via conda
by
Pierre Lindenbaum
161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Answer: Cannot install bwa-mem2 via conda
by
Istvan Albert
100k
The problem is because you are running the ARM based conda. Bioinformatics software is compiled for Intel based CPUs only. Uninstall that …
Comment: Duplicated reads (IDs) from nanopore sequencing
by
marco.barr
▴ 110
[https://www.biostars.org/p/9559284/][1] you could try this [1]: https://www.biostars.org/p/9559284/
Comment: Duplicated reads (IDs) from nanopore sequencing
by
marco.barr
▴ 110
it's also true that now I only have one pod5 folder, thanks anyway for clarifying the focus of the issue. Yes, they are probably secondary …
Comment: Applying the metacell2 algorithm using python
by
Wayne
★ 2.0k
I'm unsure. I will say that looking for [ normalize](https://github.com/search?q=repo%3Atanaylab%2Fmetacells%20normalize&type=code) among t…
Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
by
Pierre Lindenbaum
161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Answer: genome finishing
by
nd48
▴ 20
What is the input? Do you have short reads (e.g. illumina 100bp paired reads)? As mentioned already, you already have the consensus i.e. c…
Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
by
biology_inform
▴ 50
I've been exploring different visualization tools like Circos and shinyCircos, and I've noticed that they require an input file similar to …
Answer: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
by
Papyrus
★ 2.9k
If you want to plot global accessibility, maybe you would like to plot the ATAC "signal", instead of specific peaks. In a very general mann…
Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
by
Pierre Lindenbaum
161k
> I haven't been able to figure out how to generate this plot. show us what you tried and the error messages
Comment: Duplicated reads (IDs) from nanopore sequencing
by
njornet
▴ 20
I think this is the answer but I can't find in the tags info about primary and secondary alignments. I've only found in the flag that the s…
Answer: Add stats to boxplot in R
by
Lélé
• 0
Hi, Have you tried switching the order of the stat_compare_means for the Wilcox with the one for kruskall-Wallis ?
Comment: genome finishing
by
Joe
21k
I may be wrong here so someone feel free to correct me, but I've never noticed a variants file from `SPAdes`, and certainly never used one …
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