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45
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0
answers
4.4k
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45 follow
0
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Tutorial: Exploring cancer mutation data portals
data portal icgc cancer tutorial tcga mutation written 3.0 years ago by Malachi Griffith ♦ 15k • updated 5 days ago by uruzan • 0
0
votes
2
answers
621
views
2
answers
Does anybody success to download data using icgc-storage-client ?
data icgc download written 15 months ago by sacha • 730 • updated 12 days ago by morovatunc • 320
0
votes
0
answers
131
views
0
answers
Data retrieval icgc
icgc r-package written 3 months ago by anshupa.vssut • 10
2
votes
1
answer
253
views
1
answer
How to download a whole ICGC release of processed data?
icgc download written 4 months ago by Michael Schubert • 6.6k
11
votes
4
answers
3.8k
views
4
answers
Variant allele frequency in TCGA and ICGC
genome vcf icgc tcga maf written 19 months ago by Maarten Slagter • 50 • updated 5 months ago by Biostar ♦♦ 10
5
votes
2
answers
288
views
2
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Using 2 different references in my pipeline
genome icgc next-gen written 6 months ago by michal.devir • 0 • updated 6 months ago by igor • 4.1k
3
votes
1
answer
358
views
1
answer
GL000201,GL000202... etc What are these?
wgs icgc bam written 13 months ago by morovatunc • 320 • updated 13 months ago by igor • 4.1k
0
votes
0
answers
387
views
0
answers
How to get annotation of miRNAs expression from ICGC ?
icgc rna-seq mirna written 14 months ago by jack • 650 • updated 13 months ago by Biostar ♦♦ 10
2
votes
1
answer
878
views
1
answer
Download ICGC gene expression data
icgc gene expression download cancer written 13 months ago by lkmklsmn • 650 • updated 13 months ago by zlira • 50
6
votes
1
answer
752
views
1
answer
ICGC Variant Calling Pipelines
icgc mutation calling written 15 months ago by morovatunc • 320 • updated 15 months ago by vchris_ngs • 3.1k
0
votes
0
answers
661
views
0
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ICGC data ontology
mage-tab icgc sdrf written 18 months ago by Maarten Slagter • 50 • updated 18 months ago by Biostar ♦♦ 10
0
votes
0
answers
478
views
0
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AND filter in ICGC data portal?
data portal icgc restful http written 19 months ago by Maarten Slagter • 50
2
votes
1
answer
560
views
1
answer
Microarray data analysis
gene log ratio gene expression microarray icgc written 20 months ago by maki.dur • 0 • updated 20 months ago by vivekbhr • 420
0
votes
0
answers
835
views
0
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TCGA/ICGC do not match raw count expression data
tcga icgc gene expression rna-seq written 21 months ago by zamalloa • 20
0
votes
0
answers
533
views
0
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which database to prefer for creating NGS Disease related Panels?
ngs panel icgc tcga cosmic written 22 months ago by gskbioinfo143 • 30
0
votes
1
answer
832
views
1
answer
Quality scores in ICGC simple somatic mutation file
simple somatic mutation icgc quality score written 2.0 years ago by tralynca • 30 • updated 23 months ago by Ying W • 3.5k
1
vote
1
answer
1.1k
views
1
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ICGC/TCGA clinical data. Specimen_interval longer than donor survival time?
icgc tcga survival analysis specimen time written 2.2 years ago by mjt.professional • 0 • updated 23 months ago by Ying W • 3.5k
2
votes
1
answer
974
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1
answer
How to calculate aneuploidy across TCGA / ICGC tumor samples
aneuploidy tumor icgc tcga somatic written 2.1 years ago by mrgraeme • 10 • updated 2.0 years ago by Sean Davis ♦ 23k
1
vote
1
answer
756
views
1
answer
Where can I find more Cancer Datasets for Validation purposes
gene icgc tcga resources cancer written 2.3 years ago by sviatoslav.kendall • 400 • updated 2.3 years ago by camachofrancine • 70
5
votes
1
answer
1.4k
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1
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CNV and Clinical Data for Cancer - Alternative to TCGA or ICGC
icgc tcga cnv cancer written 2.5 years ago by dirigible2012 • 290 • updated 2.5 years ago by Obi Griffith ♦ 15k
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