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Does anybody success to download data using icgc-storage-client ?
data icgc download written 2.8 years ago by sacha • 1.6k • updated 11 weeks ago by RamRS ♦ 19k
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Downloading triple negative breast cancer data from ICGC
icgc rna-seq written 4 months ago by graeme.thorn • 30
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283
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icgc gene expression data
icgc written 8 months ago by Pappu • 1.8k
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62 follow
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Tutorial: Exploring cancer mutation data portals
data portal icgc cancer tutorial tcga mutation written 4.5 years ago by Malachi Griffith ♦ 17k
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Blacklist and greylist in PCAWG
icgc tcga pcawg written 11 months ago by shiyang93 • 50
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Downloading controlled access data from ICGC for specific ID?
icgc rna-seq written 16 months ago by vchris_ngs • 4.6k
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ICGC/TCGA clinical data. Specimen_interval longer than donor survival time?
icgc tcga survival analysis specimen time written 3.7 years ago by mjt.professional • 0 • updated 16 months ago by Biostar ♦♦ 20
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ICGC exp_array data double measurements?
duplicates icgc expression written 16 months ago by pulyakhina • 20
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592
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ICGC file ids
data icgc wgs written 16 months ago by zoharm • 0
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390
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`chromosome_strand` all change to `1`
icgc awk written 17 months ago by wangshx • 10
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How to understand somatic mutation of ICGC data
genome icgc somatic mutation written 18 months ago by wangshx • 10 • updated 18 months ago by solo7773 • 60
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Data retrieval icgc
icgc r-package written 22 months ago by anshupa.vssut • 30
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5 follow
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How to download a whole ICGC release of processed data?
icgc download written 23 months ago by Michael Schubert • 6.8k
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Variant allele frequency in TCGA and ICGC
genome vcf icgc tcga maf written 3.2 years ago by Maarten Slagter • 80 • updated 2.0 years ago by Biostar ♦♦ 20
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Using 2 different references in my pipeline
genome icgc next-gen written 2.1 years ago by michal.devir • 0 • updated 2.1 years ago by igor ♦ 7.1k
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GL000201,GL000202... etc What are these?
wgs icgc bam written 2.6 years ago by morovatunc • 380 • updated 2.6 years ago by igor ♦ 7.1k
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How to get annotation of miRNAs expression from ICGC ?
icgc rna-seq mirna written 2.7 years ago by jack • 730 • updated 2.6 years ago by Biostar ♦♦ 20
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Download ICGC gene expression data
icgc gene expression download cancer written 2.7 years ago by lkmklsmn • 860 • updated 2.7 years ago by zlira • 70
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1
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ICGC Variant Calling Pipelines
icgc mutation calling written 2.8 years ago by morovatunc • 380 • updated 2.8 years ago by vchris_ngs • 4.6k
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1.3k
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ICGC data ontology
mage-tab icgc sdrf written 3.1 years ago by Maarten Slagter • 80 • updated 3.1 years ago by Biostar ♦♦ 20
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862
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AND filter in ICGC data portal?
data portal icgc restful http written 3.1 years ago by Maarten Slagter • 80
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1
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Microarray data analysis
gene log ratio gene expression microarray icgc written 3.3 years ago by maki.dur • 0 • updated 3.3 years ago by vivekbhr • 510
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1.6k
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TCGA/ICGC do not match raw count expression data
tcga icgc gene expression rna-seq written 3.3 years ago by zamalloa • 20
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878
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which database to prefer for creating NGS Disease related Panels?
ngs panel icgc tcga cosmic written 3.4 years ago by gskbioinfo143 • 50
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Quality scores in ICGC simple somatic mutation file
simple somatic mutation icgc quality score written 3.6 years ago by tralynca • 40 • updated 3.5 years ago by Ying W • 3.9k
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How to calculate aneuploidy across TCGA / ICGC tumor samples
aneuploidy tumor icgc tcga somatic written 3.7 years ago by mrgraeme • 20 • updated 3.6 years ago by Sean Davis ♦ 25k
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Where can I find more Cancer Datasets for Validation purposes
gene icgc tcga resources cancer written 3.8 years ago by sviatoslav.kendall • 470 • updated 3.8 years ago by camachofrancine • 90
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CNV and Clinical Data for Cancer - Alternative to TCGA or ICGC
icgc tcga cnv cancer written 4.1 years ago by dirigible2012 • 310 • updated 4.1 years ago by Obi Griffith ♦ 17k
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