Showing: memereset
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Use PWM from CISBP-rna to find motif with MEME (FIMO)
cisbp meme motif written 23 months ago by ZheFrench250 • updated 22 days ago by biofalconch410
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Is it possible to convert Minimal MEME Motif Format to PFMatrix
motif meme pfm written 6 weeks ago by guandongshang0 • updated 6 weeks ago by Mensur Dlakic2.1k
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Motif Analysis searching for NFKB/CEBPB
memechip meme rsat chip-seq motifanalysis written 3 months ago by ilyco543210 • updated 3 months ago by manuel.belmadani1.1k
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Obtaining transcription factors from DNA consensus motif
meme motif tf transcription factors written 5.2 years ago by drautuna60 • updated 4 months ago by ATpoint25k
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3
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Motif analysis in repeat-rich ChIP-seq data?
chip-seq meme motif written 6 months ago by robbuurstede0 • updated 5 months ago by simon.vanheeringen170
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Issue with replicating from a research paper-motifs
fasta rna meme sequence motif written 6 months ago by joshua.steier20 • updated 6 months ago by geek_y10.0k
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329
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Converting motif databases from meme suite to other formats
meme format motif written 7 months ago by nanoide30 • updated 7 months ago by Alex Reynolds29k
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Motif discovery using MEME
meme motif conserved domain written 2.9 years ago by ####190 • updated 11 months ago by Biostar ♦♦ 20
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3
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Meme-chip: How do I make my input sequences all the same length?
meme-chip meme sequences written 11 months ago by kdc1530 • updated 11 months ago by Alex Reynolds29k
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Parsing AME tsv file
ame tsv meme motif bed written 12 months ago by rbronste290
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How to convert MEME MOTIF to all potential sequences?
rna meme motif sequences written 13 months ago by Oo0 • updated 13 months ago by jared.andrews073.7k
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FIMO vs AME - true positive and false positives across search tools
ame fimo meme motif written 14 months ago by rbronste290 • updated 13 months ago by Biostar ♦♦ 20
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FIMO target coordinates in fasta file
fasta fimo meme motif written 22 months ago by rbronste290 • updated 17 months ago by ATpoint25k
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finds motif in long sequence using meme
meme bacteria motif written 18 months ago by shira.zaltsman10 • updated 18 months ago by Devon Ryan92k
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Fimo output for classes of TFs from specific database
fimo meme chip-seq written 18 months ago by rbronste290 • updated 18 months ago by Alex Reynolds29k
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Visualizing MEME results togeather with a Phylogenetic Tree
phylogeny domain meme protein motif written 18 months ago by venuraherath20 • updated 18 months ago by Sishuo Wang180
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714
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Extracting the exact motif location from FIMO
fimo meme motif chip-seq written 19 months ago by rbronste290 • updated 19 months ago by h.mon28k
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405
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3
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1
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FIMO output to bed
bedtools fimo meme bedops written 22 months ago by rbronste290 • updated 22 months ago by YaGalbi1.4k
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FIMO outputs only Chr1 hits
fimo meme motif written 22 months ago by rbronste290 • updated 22 months ago by Satyajeet Khare1.5k
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De-novo motif discovery and repeats
de novo fimo meme motif written 22 months ago by rbronste290 • updated 22 months ago by Alex Reynolds29k
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0
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Meme-Tools: Bit score
meme alignment bit score written 2.1 years ago by chrys40 • updated 2.1 years ago by Alex Reynolds29k
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