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Filtering TRANSFAC to get human TF motifs only
meme chip-seq atac-seq transfac written 4 months ago by ahmed.saadawi0 • updated 3 months ago by Biostar ♦♦ 20
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Visualizing MEME results togeather with a Phylogenetic Tree
phylogeny domain meme protein motif written 2.1 years ago by venuraherath20 • updated 4 months ago by letunic10
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Use PWM from CISBP-rna to find motif with MEME (FIMO)
cisbp meme motif written 2.5 years ago by ZheFrench300 • updated 7 months ago by biofalconch440
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Is it possible to convert Minimal MEME Motif Format to PFMatrix
motif meme pfm written 8 months ago by guandongshang0 • updated 8 months ago by Mensur Dlakic5.5k
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Motif Analysis searching for NFKB/CEBPB
memechip meme rsat chip-seq motifanalysis written 10 months ago by ilyco543210 • updated 10 months ago by manuel.belmadani1.2k
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Obtaining transcription factors from DNA consensus motif
meme motif tf transcription factors written 5.8 years ago by drautuna60 • updated 10 months ago by ATpoint35k
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Motif analysis in repeat-rich ChIP-seq data?
chip-seq meme motif written 12 months ago by robbuurstede0 • updated 12 months ago by simon.vanheeringen190
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Issue with replicating from a research paper-motifs
fasta rna meme sequence motif written 13 months ago by joshua.steier20 • updated 13 months ago by geek_y11k
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Converting motif databases from meme suite to other formats
meme format motif written 14 months ago by nanoide50 • updated 14 months ago by Alex Reynolds30k
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Motif discovery using MEME
meme motif conserved domain written 3.5 years ago by ####200 • updated 18 months ago by Biostar ♦♦ 20
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Meme-chip: How do I make my input sequences all the same length?
meme-chip meme sequences written 18 months ago by kdc1530 • updated 18 months ago by Alex Reynolds30k
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Parsing AME tsv file
ame tsv meme motif bed written 19 months ago by rbronste360
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How to convert MEME MOTIF to all potential sequences?
rna meme motif sequences written 19 months ago by Oo0 • updated 19 months ago by jared.andrews075.5k
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FIMO vs AME - true positive and false positives across search tools
ame fimo meme motif written 21 months ago by rbronste360 • updated 20 months ago by Biostar ♦♦ 20
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FIMO target coordinates in fasta file
fasta fimo meme motif written 2.4 years ago by rbronste360 • updated 2.0 years ago by ATpoint35k
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finds motif in long sequence using meme
meme bacteria motif written 2.0 years ago by shira.zaltsman20 • updated 2.0 years ago by Devon Ryan95k
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Fimo output for classes of TFs from specific database
fimo meme chip-seq written 2.1 years ago by rbronste360 • updated 2.1 years ago by Alex Reynolds30k
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Extracting the exact motif location from FIMO
fimo meme motif chip-seq written 2.1 years ago by rbronste360 • updated 2.1 years ago by h.mon29k
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FIMO output to bed
bedtools fimo meme bedops written 2.4 years ago by rbronste360 • updated 2.4 years ago by YaGalbi1.5k
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