Recent Votes
Recent Locations •
All
United Kingdom, 1 minute ago
United States, 2 minutes ago
Germany, 3 minutes ago
Stony Brook University, NY, 4 minutes ago
United States, 4 minutes ago
United States, 4 minutes ago
United States, 4 minutes ago
Recent Awards •
All
Popular Question to
bioinfo
▴
140
Popular Question to
bk11
★
1.8k
Popular Question to
Agamemnon
▴
80
Popular Question to
satva72
•
0
Recent Replies
Answer: How to avoid missannotated GO terms?
by
Istvan Albert
99k
The problem most likely is with the blast alignment.
BLAST is a local aligner, getting a hit to another sequence does not mean that the…
Comment: Read count vs Depth
by
Ram
41k
Do not use spreadsheet software to view plain text files. Use a plain text utility such as BBEdit/TextWrangler/NotePad++/gedit or simple co…
Comment: How to create box plot with mean and other details(color, dimension, etc. ) R
by
Ram
41k
Please stop asking basic R/programming questions and use Google to learn the underlying concepts. Your best bet to create customized plots …
Comment: vcftools
by
Ram
41k
What output files were you expecting? Was nothing printed on the screen at all?
Comment: Consensus peaksets in DiffBind - conceptual questinos
by
Rory Stark
★
2.0k
The question of defaults for the software is often a tricky one.
I do think the mutliple-replicate method is a good idea in many cases, w…
Answer: How to query 1000 genomes project VCF files for specific regions without downloa
by
Pierre Lindenbaum
158k
bcftools works with remote indexed VCF
bcftools view "http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_cov…
Comment: Consensus peaksets in DiffBind - conceptual questinos
by
Sam
▴
300
My question was not how to do it - but conceptually, should not this be the default way to do an analysis, unless there is a good reason *n…
Comment: select unique samples in R
by
bk11
★
1.8k
Instead of `setdiff(list1$Sample_ID, list2$Sample_ID)` do this-
`setdiff(list1, list2)`
Answer: Consensus peaksets in DiffBind - conceptual questinos
by
Rory Stark
★
2.0k
What you describe - deriving a consensus set comprising the union of peaks called in at least two replicates of any sample group - is exact…
Comment: select unique samples in R
by
Matthias Zepper
4.2k
Then you use the resulting IDs to subset your original data frame(s).
Comment: convert dataframe R
by
fracarb8
★
1.3k
You need to pass a column, so `id.vars = "rows"` should work.
Comment: convert dataframe R
by
satva72
•
0
Thanks. there is this error:
"Error in melt.data.table(data, id.vars = rownames(data)) :
One or more values in 'id.vars' is invalid."
T…
Answer: How to query 1000 genomes project VCF files for specific regions without downloa
by
Jeremy Leipzig
22k
We have the 3202 samples from the 1kg DRAGEN called high coverge gVCFs on TileDB. If you sign up there we can get you some credits and assi…
Answer: convert dataframe R
by
fracarb8
★
1.3k
More a programming question than bioinfo, but using `data.table` you can
library(data.table)
df <-as.data.frame(matrix(runif(100,…
Traffic: 3617 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6