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Questions about the Getting-started of wtdbg2
illumina wtdbg2 nanopore written 3 days ago by boymin2020 • 20 • updated 3 days ago by h.mon ♦ 31k
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bacterial genome assembly with nano pore sequence data
assembly nanopore written 5 days ago by rthapa • 40
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News: Online Training - Nanopore direct RNA Sequencing
news rna-seq nanopore written 5 weeks ago by carlopecoraro2 • 1.8k
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while running ONT(nanopore) bioinforamtics pipeline, fasta files are not generating.
next-gen minion nanopore ont written 29 days ago by priyankamehta.1811 • 0 • updated 20 days ago by colindaven • 2.4k
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News: Interested in Genome Assembly using long-reads?
assembly news pacbio nanopore written 22 days ago by carlopecoraro2 • 1.8k
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what do digitisation, offset, and range values mean in fast5 file of Nanopore sequencing
nanopore written 14 months ago by 1097049297 • 0 • updated 29 days ago by Lhl • 730
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Installing Guppy in Galaxy Server
basecalling nanopore written 6 weeks ago by fang-shiang.lim • 10
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Hybrid transcriptome assembly
illumina stringtie nanopore rna-seq written 7 weeks ago by Rogerio Ribeiro • 30
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Snakemake input error with files from inconsistent naming scheme
cdna minion snakemake nanopore written 7 weeks ago by skbrimer • 640
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Detail with minimap2 output
minimap2 rna-seq nanopore written 7 weeks ago by Rogerio Ribeiro • 30
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Oxford nanopore sequnces with unequal base content?
forum sequence long reads nanopore sequencing written 8 weeks ago by alexanderbeatovic450 • 0
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Extract number of INDELs of a specific position for bam file or IGV
indels ngs alignment nanopore igv written 8 weeks ago by igit_b • 0
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Taiyaki Nanopore [Model Evaluation]
software error nanopore written 9 weeks ago by student12 • 0 • updated 9 weeks ago by Friederike ♦ 6.4k
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Tool for design of crRNA for Cas9 no amp enrichment (long read)
crrna cas9 pacbio nanopore written 4 months ago by Michael • 160 • updated 10 weeks ago by Biostar ♦♦ 20
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Good Books/Resources to learn metagenomic analysis?
assembly metagenomics bacteria long reads nanopore written 11 weeks ago by jimpinney • 10 • updated 11 weeks ago by Mensur Dlakic • 7.0k
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Big differences between two alignment tools outputs: BWA vs NanoPipe
alignment nanopipe bwa nanopore bam written 6 months ago by alexandru.bologa.marian • 0 • updated 11 weeks ago by Biostar ♦♦ 20
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Choice between Nanopore cDNA or direct RNA sequencing
cdna direct rna nanopore sequencing written 4 months ago by Macspider • 3.2k
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NA match rate and high error rate with BBMap (mapPacBio)
match rate mappacbio bbmap nanopore written 4 months ago by elcombe.c • 0 • updated 4 months ago by Biostar ♦♦ 20
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Oxford Nanopore error rate?
rate nanopore oxford error written 17 months ago by stacy734 • 40 • updated 4 months ago by oneillkza • 100
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16s rna meta-genomics analysis
nanopore sequencing written 5 months ago by krushnach80 • 850 • updated 4 months ago by Biostar ♦♦ 20
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Bedtools genome coverage
bedtools genome coverage coverage nanopore genome written 4 months ago by sl16878 • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 131k
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How to filter nanopore transcriptome alignments to trust 3' ends?
direct rna minimap2 nanopore written 5 months ago by josiegleeson1 • 0
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Assemble and get consensus of inserted sequence
assembly structural variant nanopore written 5 months ago by WouterDeCoster ♦ 44k
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Nanopore structural variant calling - more than 2 alleles on IGV track?
vcf nanopore structural variant igv written 10 months ago by BioinformaticsLad • 160 • updated 5 months ago by minalj365 • 0
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RNA-seq Nanopore and Illumina hybrid assembly to improve gene annotation
illumina rna-seq nanopore assembly written 6 months ago by nlehmann • 100 • updated 6 months ago by colindaven • 2.4k
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Sizes of Nanopore files and how to store?
wgs nanopore long-read written 6 months ago by Floris Brenk • 970 • updated 6 months ago by WouterDeCoster ♦ 44k
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GridION fastq ASSEMBLY
assembly fastq nanopore written 6 months ago by shira.zaltsman • 20
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Nanopore data decontamination
ont decontamination nanopore contamination written 9 months ago by Juke34 • 4.8k • updated 8 months ago by Biostar ♦♦ 20
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Tool: methplotlib: visualization and analysis of modified nucleotides from nanopore sequencing
methylation tool nanopore sequencing written 8 months ago by WouterDeCoster ♦ 44k
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UMI read consensus calling
umi next-gen unique molecular identifier nanopore written 9 months ago by SemiQuant • 70 • updated 9 months ago by i.sudbery ♦ 9.4k
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