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Tool: Workflow for structural variants from long read sequencing data
nanopore structural variation snakemake pacbio tool written 7 days ago by WouterDeCoster ♦ 32k
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2
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159
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Options for long-read diploid assembly
assembly diploid pacbio nanopore written 7 weeks ago by predeus • 670 • updated 6 weeks ago by harish • 130
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1
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180
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1
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PacBio and ONT reads difference !
reads nanopore pacbio written 10 weeks ago by BioGeek • 130 • updated 10 weeks ago by h.mon ♦ 20k
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631
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1
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Racon-Illumina or Pilon?
assembly polishing nanopore written 4 months ago by predeus • 670
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294
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Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 3 months ago by tarek.mohamed • 180
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5 follow
1
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Looking for a tool like fastq screen but for ONT data
ont minion tool nanopore gridion written 3 months ago by Roxane Boyer • 710 • updated 3 months ago by jrj.healey ♦ 7.7k
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208
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Long DNA reads aligned
nanopore written 3 months ago by tarek.mohamed • 180 • updated 3 months ago by WouterDeCoster ♦ 32k
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125
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Can IGV tell me where to look?
minion nanopore igv written 3 months ago by francois • 10
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1
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211
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1
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Fusion gene detection in sam file
fusion rna-seq nanopore ont written 4 months ago by pennakiza • 10 • updated 4 months ago by Kevin Blighe ♦ 30k
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428
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9 follow
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News: #NGSchool2018 summer school in bioinformatics
news ngschool nanopore personalised medicine written 4 months ago by kzkedzierska • 120
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10 follow
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Oxford Nanopore and Illumina hybrid assembly
assembly nanopore ont written 21 months ago by igor ♦ 6.8k • updated 5 months ago by Carambakaracho • 550
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1
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374
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long-range technologies for genome scaffolding
10x hi-c scaffolding nanopore optical maps written 8 months ago by yurybukhman • 10 • updated 6 months ago by Damian Kao ♦ 15k
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263
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test dataset for MinIon algorithm development
nanopore sequencing written 6 months ago by christacaggiano • 20 • updated 6 months ago by WouterDeCoster ♦ 32k
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Nanopore data and downstream anlysis
nanopore written 7 months ago by MAPK • 1.3k • updated 7 months ago by WouterDeCoster ♦ 32k
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211
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How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 7 months ago by BioGeek • 130
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311
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error using porechop on nanopore reads
porechop nanopore written 7 months ago by KVC_bioinfo • 350
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415
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aligner for 1D^2 oxford nanopore data
minimap2 1d^2 nanopore written 7 months ago by KVC_bioinfo • 350
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414
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1
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cutadapt vs porechop
porechop 1d^2 nanopore cutadapt written 7 months ago by KVC_bioinfo • 350 • updated 7 months ago by WouterDeCoster ♦ 32k
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1
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568
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How to find alternative splicing isoforms in reads generated by nanopore sequencing experiment
nanopore long-reads rna-seq clustering sequencing written 7 months ago by Florian BERNARD • 20 • updated 7 months ago by jean.elbers • 370
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466
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1
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look for sequences containing a specific motif
sequence clustalw nanopore blast rna-seq written 8 months ago by Florian BERNARD • 20 • updated 8 months ago by Alex Reynolds ♦ 26k
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415
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5 follow
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How to remove split/broken reads from bam file
minimap2 graphmap samtools split nanopore written 8 months ago by BioGeek • 130 • updated 8 months ago by Macspider • 2.6k
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Page: Collecting the articles about Oxford Nanopore Technology
page nanopore ont written 10 months ago by KVC_bioinfo • 350 • updated 10 months ago by genomax ♦ 57k
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1
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753
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Chimeric alignment with minimap2
minimap2 chimeric nanopore written 10 months ago by Nicolas Rosewick ♦ 6.8k • updated 10 months ago by Macspider • 2.6k
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540
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Detection of chimeric / fusion transcript using nanopore long reads
chimeric nanopore written 10 months ago by Nicolas Rosewick ♦ 6.8k
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403
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Job: PostDoc at Human Genome Sequencing Center at Baylor College of Medicine
pacbio next-gen job nanopore structural variation written 10 months ago by fritz.sedlazeck • 40
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trimming nano pore reads based on quality score.
nanopore trim written 11 months ago by KVC_bioinfo • 350 • updated 11 months ago by WouterDeCoster ♦ 32k
6
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1
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820
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Adapters fro nano pore sequence
adaptor nanopore written 11 months ago by KVC_bioinfo • 350
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1
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466
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1
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Removing adapters from Oxford nano pore reads
adaptors nanopore ont written 11 months ago by KVC_bioinfo • 350 • updated 11 months ago by WouterDeCoster ♦ 32k
0
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414
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Export reads from an alignment file
bwa samtools sam nanopore mapping written 11 months ago by elena.syp • 0
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Identifying insertion of transposable element in a large plant genome, any recommendations on my situation?
k-mer illumina transposable element nanopore written 12 months ago by johnnytam100 • 50
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