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News: Comparative Genomics course in October - last 2 places left
illumina news next-gen pacbio nanopore written 11 hours ago by carlopecoraro2 • 1.2k
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Oxford Nanopore sequencing_summary.txt file description
nanopore sequencing written 7 weeks ago by anastasiia.satyr • 20 • updated 1 day ago by WouterDeCoster ♦ 40k
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Blast an organism against a downloaded database
ncbi blast databases nanopore written 8 days ago by caro-ca • 0 • updated 8 days ago by Mensur Dlakic • 1.2k
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Tools for downsampling/resampling/subsampling Oxford Nanopore reads
nanopore written 8 days ago by nkuyfq • 60
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what do digitisation, offset, and range values mean in fast5 file of Nanopore sequencing
nanopore written 23 days ago by 1097049297 • 0
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How to use minimap2 with mappy within python script
alignment nanopore written 4 weeks ago by Roxane Boyer • 1.0k
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chop Nanopore (long) reads
alignment nanopore sequencing written 29 days ago by lijingtang2010 • 0 • updated 28 days ago by ATpoint ♦ 23k
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High CDS Count in my assembled Genome using Nanopore reads (ONT) data
wgs high cds nanopore assembly written 4 weeks ago by Optimist • 70 • updated 4 weeks ago by h.mon ♦ 27k
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De novo hybrid genome assembly of novel bacteria
hybrid illumina nanopore assembly written 6 weeks ago by tmurphy201596 • 0 • updated 6 weeks ago by Mensur Dlakic • 1.2k
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Annotate plasmids with custom database + visualization
gene plasmid visualization nanopore annotation written 6 weeks ago by quimvipu1994 • 0 • updated 6 weeks ago by Mensur Dlakic • 1.2k
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Why do researchers prefer to use Oxford Nanopore Technologies' 1D and sequencing rather than 1D2 when sequencing the human genome?
human genome sequencing nanopore ont written 7 weeks ago by kamanovae • 0
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Filter nanopore fastq files by start time
filter fastq nanopore start time written 9 weeks ago by sendhelp • 0 • updated 9 weeks ago by genomax ♦ 71k
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Processing Raw Nanopore Data
base calling nanopore sequencing written 10 weeks ago by anastasiia.satyr • 20 • updated 10 weeks ago by WouterDeCoster ♦ 40k
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Mapping to custom reference minimap2/IGV
minimap2 mapping nanopore igv written 10 weeks ago by sendhelp • 0 • updated 10 weeks ago by genomax ♦ 71k
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Improvement of genome assembly using illumina contigs and nanopore reads
illumina nanopore scaffolding genome assembly written 12 weeks ago by KG • 10 • updated 12 weeks ago by h.mon ♦ 27k
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Job: Postdoctoral Position in Population Genomics of an Amazing Animal
genome evolution job population nanopore tunicate written 3 months ago by Charles Plessy • 2.7k
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Direct cDNA nanopore strandness discover - 2D approach
direct cdna long reads nanopore strand written 3 months ago by ruisergioluis • 20
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Necessary to filter out nanopore (or PacBio) reads before mapping?
minimap2 alignment mapping nanopore written 3 months ago by BioinformaticsLad • 140 • updated 3 months ago by Biostar ♦♦ 20
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Programs for bacterial gene prediction/annotation for nanopore assembly?
annotation gene prediction nanopore prokka glimmer written 3 months ago by BioinformaticsLad • 140 • updated 3 months ago by predeus • 1.2k
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Oxford Nanopore error rate?
rate nanopore oxford error written 4 months ago by stacy734 • 40 • updated 4 months ago by WouterDeCoster ♦ 40k
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Using DESeq2with Oxford Nanopore Technology Direct RNA Sequencing
deseq2 minion rna-seq nanopore written 4 months ago by uhlkatie • 0 • updated 4 months ago by ATpoint ♦ 23k
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BLAST fastq file to a custom database
fastq blast database nanopore written 4 months ago by hellen6570 • 10 • updated 4 months ago by JC ♦ 8.4k
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Tool: TAMA: long read RNA sequencing (Iso-Seq and Nanopore) processing tools
isoseq tool tama pacbio iso-seq nanopore written 4 months ago by genomerik • 40
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Software to extend and join contigs for bacterial genome using illumina and nanopore reads
assembly contig join nanopore denovo aligngraph written 5 months ago by ambi1999 • 30 • updated 5 months ago by Leo Poorvin • 0
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Racon-Illumina or Pilon?
assembly polishing nanopore written 15 months ago by predeus • 1.2k • updated 5 months ago by sullis02 • 0
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Nanopore reads of simple repeats
nanopore written 5 months ago by BioinformaticsLad • 140
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Methods to determine if a nanopore 1-D read is from the forward or reverse strand without a reference?
nanopore written 5 months ago by BioinformaticsLad • 140 • updated 5 months ago by WouterDeCoster ♦ 40k
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Oxford Nanopore insertion vs deletion rates
basecalling nanopore written 6 months ago by BioinformaticsLad • 140 • updated 5 months ago by WouterDeCoster ♦ 40k
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Low Mapping percentage with Minimap2 due to contamination
minimap2 reference genome mapping nanopore written 6 months ago by rah • 20
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sam2rma error while doing metagenomics analysis
megantools sam2rma nanopore megan written 6 months ago by shashi • 0 • updated 6 months ago by WouterDeCoster ♦ 40k
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