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Pilon polishing highly repetitive nanopore assembly
genome assembly pilon nanopore canu written 13 hours ago by treitlis • 30 • updated 13 hours ago by WouterDeCoster ♦ 35k
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How to meassure transcript expression from Oxford nanopore sequencing data
transcript expression rna-seq nanopore written 3 days ago by caggtaagtat • 380 • updated 3 days ago by WouterDeCoster ♦ 35k
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429
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Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 4 months ago by tarek.mohamed • 190 • updated 15 days ago by WouterDeCoster ♦ 35k
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117
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running problem Albacore
software error next-gen albacore nanopore written 24 days ago by melinaruggiero • 0 • updated 24 days ago by RamRS ♦ 19k
4
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102
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Error correction of long reads
nanopore pacbio sequencing written 4 weeks ago by IP • 500
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142
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How to find a specific sequence within noisy reads ?
python sequence match nanopore rna-seq written 6 weeks ago by florian.bernard5 • 30
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Tool: pinfish: tools to annotate genomes using long read transcriptomics data
nanopore tool annotation isofrom rna-seq cdna written 6 weeks ago by Botond Sipos • 1.7k
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Tool: Workflow for structural variants from long read sequencing data
nanopore structural variation snakemake pacbio tool written 8 weeks ago by WouterDeCoster ♦ 35k
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217
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6 follow
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Options for long-read diploid assembly
assembly diploid pacbio nanopore written 3 months ago by predeus • 690 • updated 3 months ago by harish • 130
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PacBio and ONT reads difference !
reads nanopore pacbio written 4 months ago by BioGeek • 130 • updated 4 months ago by h.mon ♦ 21k
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Racon-Illumina or Pilon?
assembly polishing nanopore written 6 months ago by predeus • 690
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5 follow
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Looking for a tool like fastq screen but for ONT data
ont minion tool nanopore gridion written 4 months ago by Roxane Boyer • 800 • updated 4 months ago by jrj.healey ♦ 9.1k
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254
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Long DNA reads aligned
nanopore written 4 months ago by tarek.mohamed • 190 • updated 4 months ago by WouterDeCoster ♦ 35k
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Can IGV tell me where to look?
minion nanopore igv written 5 months ago by francois • 10
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Fusion gene detection in sam file
fusion rna-seq nanopore ont written 5 months ago by pennakiza • 10 • updated 5 months ago by Kevin Blighe ♦ 33k
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497
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9 follow
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News: #NGSchool2018 summer school in bioinformatics
news ngschool nanopore personalised medicine written 6 months ago by kzkedzierska • 120
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10 follow
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Oxford Nanopore and Illumina hybrid assembly
assembly nanopore ont written 22 months ago by igor ♦ 7.1k • updated 7 months ago by Carambakaracho • 620
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long-range technologies for genome scaffolding
10x hi-c scaffolding nanopore optical maps written 10 months ago by yurybukhman • 20 • updated 8 months ago by Damian Kao ♦ 15k
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test dataset for MinIon algorithm development
nanopore sequencing written 8 months ago by christacaggiano • 20 • updated 8 months ago by WouterDeCoster ♦ 35k
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Nanopore data and downstream anlysis
nanopore written 9 months ago by MAPK • 1.3k • updated 8 months ago by WouterDeCoster ♦ 35k
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How to extract all ONT reads that connect/overlaps two or more contigs ?
reads nanopore scaffolding overlaps written 9 months ago by BioGeek • 130
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error using porechop on nanopore reads
porechop nanopore written 9 months ago by KVC_bioinfo • 350
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467
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aligner for 1D^2 oxford nanopore data
minimap2 1d^2 nanopore written 9 months ago by KVC_bioinfo • 350
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470
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1
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cutadapt vs porechop
porechop 1d^2 nanopore cutadapt written 9 months ago by KVC_bioinfo • 350 • updated 9 months ago by WouterDeCoster ♦ 35k
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659
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How to find alternative splicing isoforms in reads generated by nanopore sequencing experiment
nanopore long-reads rna-seq clustering sequencing written 9 months ago by Florian BERNARD • 20 • updated 9 months ago by jean.elbers • 460
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540
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look for sequences containing a specific motif
sequence clustalw nanopore blast rna-seq written 10 months ago by Florian BERNARD • 20 • updated 10 months ago by Alex Reynolds ♦ 26k
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5 follow
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How to remove split/broken reads from bam file
minimap2 graphmap samtools split nanopore written 10 months ago by BioGeek • 130 • updated 10 months ago by Macspider • 2.6k
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Page: Collecting the articles about Oxford Nanopore Technology
page nanopore ont written 11 months ago by KVC_bioinfo • 350 • updated 11 months ago by genomax ♦ 59k
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Chimeric alignment with minimap2
minimap2 chimeric nanopore written 11 months ago by Nicolas Rosewick ♦ 7.0k • updated 11 months ago by Macspider • 2.6k
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Detection of chimeric / fusion transcript using nanopore long reads
chimeric nanopore written 12 months ago by Nicolas Rosewick ♦ 7.0k
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