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Using needle command with no output to the terminal

silent needle emboss written 3.5 years ago by Jacob • 10 • updated 3.5 years ago by Charles Plessy • 2.7k

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1.1k

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cbioPortal MutationMapper protein domain annotation not up-to-date

lollipop needle written 4.3 years ago by Nicolas Rosewick ♦ 9.3k • updated 4.3 years ago by Biostar ♦♦ 20

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1.7k

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Needle Crashing on Specific Sequences

pairwise fasta needle alignment emboss written 4.6 years ago by juanfelipe2005 • 10 • updated 4.6 years ago by 5heikki ♦ 9.2k

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3.3k

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EMBOSS Needle: Read sequences from stdin

linux needle stdin unix emboss written 6.7 years ago by pld ♦ 4.9k • updated 6.7 years ago by brentp ♦ 23k

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Recent Replies

C: Plink error with reading phenotype file by MAPK • 1.7k
Hi, Thanks for your comment. I think that makes sense. How do I add actual FID in my BFILE? Right...
A: Plink error with reading phenotype file by chrchang523 ♦ 7.6k
Check the correspondence between FID/IID in $METADATA and FID/IIDs in your .fam file.
C: Download entire human rRNA sequences by dare_devil • 1.3k
This [link][1] may help you. Also, look at this [paper][2] [1]: http://ribopicker.sourceforge...
A: Setup PHG with Singularity by petinho86 • 0
Hi Zack, Yes singularity has nothing to do with this. It looks like it all stands and falls with...
C: List of TCGA genes differentially expressed in normal versus tumor by a.james • 210
there is no option to download the differentially expressed genes
C: Do read group names have effect on marking duplicates using GATK? by Kevin Blighe ♦ 69k
If no answer here, you may consider asking on the GATK Support Forum, which, I assume, caters als...
C: What is index in sortmerna? by GenoMax ♦ 95k
Ah I see. You used `folder containing input fasta file` as an indicator that you have a real valu...
A: is there any solution to convert a multifasta file to csv? by Mensur Dlakic • 8.4k
This should get you going: from Bio import SeqIO for re in SeqIO.parse('CHIKV1-X-gb_AB45...
C: Annotate PBMC scRNA-seq data by yzhao140 • 0
Thank you very much! I will have a try.
C: is there any solution to convert a multifasta file to csv? by _r_am ♦ 32k
You're halfway there. `re.id + redescription` should give you the whole header, make sure of that...
C: is there any solution to convert a fasta file to csv? by projetoic • 0
Multifasta - with many sequences fasta. I'm going to edit sorry. Is there any solution?
A: limma goana or kegg by Gordon Smyth • 2.1k
See ?goana. The input to goana is pretty straightforward. Just read the documentation, no need to...

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