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3
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1
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177
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1
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ETE3: error while parsing Newick tree
ete3 newick tree ete written 4 months ago by a.zielezinski ♦ 9.1k • updated 4 months ago by Mensur Dlakic • 4.2k
2
votes
3
answers
147
views
3
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How to edit name/ID in a newick tree format
format newick written 6 months ago by imda • 10
8
votes
2
answers
1.4k
views
2
answers
Replace Sequence IDs in many text files (newick format) - Change script
perl replace tree newick written 3.1 years ago by ibasan • 40 • updated 7 months ago by Biostar ♦♦ 20
0
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2
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2.7k
views
5 follow
2
answers
Convert Nexus format to Newick format
perl converter nexus newick written 2.1 years ago by ArusjakGevorgyan • 20 • updated 7 months ago by BlastedBadger • 90
0
votes
0
answers
267
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0
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Importing Newick phylogenetic tree with ade4::newick2phylog() fails with moderate size tree
phylogenetic R ade4 newick ape written 8 months ago by ido.idobar • 10
3
votes
2
answers
532
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2
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Adding branch lengths to a topology
fasta phylogenetics newick written 11 months ago by treesandthings • 20 • updated 11 months ago by Shicheng Guo • 8.1k
0
votes
1
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1.0k
views
1
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Reduced versions of the 23MB tree by scripts?
phylogeny treeoflife tree newick written 4.3 years ago by monstercolorfun • 10 • updated 11 months ago by Biostar ♦♦ 20
7
votes
2
answers
566
views
2
answers
Newick trees analysis software
software tree analysis newick written 13 months ago by roussine • 10 • updated 13 months ago by Joe ♦ 16k
0
votes
0
answers
495
views
0
answers
Generate all possible bifurkating newick trees for N taxa
generate tree newick written 15 months ago by al-ash • 140
0
votes
1
answer
421
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1
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taxa names in phylogenetic tree
perl phylogenetics newick shell written 18 months ago by erick_rc93 • 0 • updated 18 months ago by Pierre Lindenbaum ♦ 127k
3
votes
2
answers
5.3k
views
2
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Construct Newick Tree from tab-delimited or csv file of phylogeny, preferably in Python
phylogeny python tree newick written 5.5 years ago by weslfield • 90 • updated 19 months ago by Biostar ♦♦ 20
5
votes
1
answer
2.0k
views
1
answer
How does ggtree interprets branch support value (e.g bootstrap value) given as node label?
phylogenetic R ggtree newick written 21 months ago by Chirag Parsania • 1.7k • updated 21 months ago by zx8754 ♦ 9.1k
2
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0
answers
605
views
0
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Generate all NNI-neighbours of a tree
nni phylogenetics tree newick written 22 months ago by phylomat • 0
1
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1
answer
627
views
1
answer
Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 22 months ago by neutrinoscientist • 0 • updated 22 months ago by Jean-Karim Heriche ♦ 21k
0
votes
0
answers
715
views
0
answers
PuTTY newick utilities
software error newick written 2.1 years ago by anstuteville • 0
4
votes
1
answer
1.4k
views
1
answer
Import files in newick format with python script
import files python format newick written 2.1 years ago by ArusjakGevorgyan • 20 • updated 2.1 years ago by Selenocysteine • 600
0
votes
1
answer
882
views
1
answer
Generating a tree (nex or nwk file) starting from msa
nexus tree newick msa written 2.4 years ago by lessismore • 770 • updated 2.4 years ago by Jean-Karim Heriche ♦ 21k
12
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0
answers
1.7k
views
7 follow
0
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How do I generate all possible Newick Tree permutations for a set of species given an outgroup in Python?
phylogeny python phylogenetics tree newick written 2.5 years ago by anonymous1192976466 • 50
3
votes
3
answers
4.5k
views
7 follow
3
answers
Get phylogenetic tree from abundance table
phylogenetic ncbi newick written 3.0 years ago by David • 160
0
votes
0
answers
765
views
0
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remove all leaves from greengene tree
greengene tree newick written 3.1 years ago by sacha • 1.9k
1
vote
3
answers
2.3k
views
3
answers
Bootstrap values on newick tree
phylogenetics tree newick bootstraps written 3.5 years ago by ddowlin • 70 • updated 3.2 years ago by Joseph Hughes • 2.8k
1
vote
1
answer
2.1k
views
1
answer
Removing duplicate leaves/tips from newick tree
phylogeny pruning trees tree newick written 3.4 years ago by ovon • 20 • updated 3.4 years ago by jhc • 2.8k
1
vote
2
answers
980
views
2
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treefix tree output format conversion
tree-format newick written 3.5 years ago by arunprasanna83 • 40 • updated 3.5 years ago by Brice Sarver • 3.5k
2
votes
1
answer
1.2k
views
1
answer
how can i simplfy a newick file with 10 000 entries into a tree of only 10 entries
genome newick written 4.3 years ago by monstercolorfun • 10 • updated 3.6 years ago by Biostar ♦♦ 20
0
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0
answers
1.2k
views
0
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How to convert tuple to extended Newick format in ETE3 (python)?
python format conversion newick ete3 written 3.8 years ago by hazelle64 • 0 • updated 3.8 years ago by genomax ♦ 80k
0
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0
answers
3.6k
views
0
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Converting *.con.tre into Newick format
mrbayes newick posterior probability convert written 3.9 years ago by jee-wee • 0
3
votes
2
answers
1.4k
views
2
answers
Using io.StringIO() with biopython Phylo parse
python phylogenetics biopython newick tree written 4.2 years ago by mbio.kyle • 360 • updated 4.2 years ago by Eric T. • 2.6k
0
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1
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3.0k
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1
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Newick To Distance Matrix
matrix newick tree distance written 6.0 years ago by Haluk • 170 • updated 4.3 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.3k
views
1
answer
Phylogenetic distance betwee species
phylogenetics newick trees written 4.4 years ago by Jautis • 290 • updated 4.4 years ago by jhc • 2.8k
4
votes
1
answer
1.6k
views
1
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Replace tip names in a newick file
format newick written 5.0 years ago by tlorin • 260 • updated 5.0 years ago by a.zielezinski ♦ 9.1k
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