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<prev • 29 results • page 1 of 1 • next >
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Generate all possible bifurkating newick trees for N taxa
generate tree newick written 9 weeks ago by al-ash • 100
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1
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198
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1
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taxa names in phylogenetic tree
perl phylogenetics newick shell written 4 months ago by erick_rc93 • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 116k
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Construct Newick Tree from tab-delimited or csv file of phylogeny, preferably in Python
phylogeny python tree newick written 4.4 years ago by weslfield • 90 • updated 6 months ago by Biostar ♦♦ 20
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760
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How does ggtree interprets branch support value (e.g bootstrap value) given as node label?
phylogenetic R ggtree newick written 7 months ago by Chirag Parsania • 1.3k • updated 7 months ago by zx8754 ♦ 6.5k
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300
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Generate all NNI-neighbours of a tree
nni phylogenetics tree newick written 8 months ago by phylomat • 0
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1
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300
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Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 9 months ago by neutrinoscientist • 0 • updated 9 months ago by Jean-Karim Heriche ♦ 18k
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PuTTY newick utilities
software error newick written 11 months ago by anstuteville • 0
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1
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728
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1
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Import files in newick format with python script
import files python format newick written 11 months ago by ArusjakGevorgyan • 20 • updated 11 months ago by Selenocysteine • 530
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Convert Nexus format to Newick format
perl converter nexus newick written 12 months ago by ArusjakGevorgyan • 20 • updated 12 months ago by lieven.sterck ♦ 3.9k
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Generating a tree (nex or nwk file) starting from msa
nexus tree newick msa written 16 months ago by lessismore • 570 • updated 16 months ago by Jean-Karim Heriche ♦ 18k
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7 follow
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How do I generate all possible Newick Tree permutations for a set of species given an outgroup in Python?
phylogeny python phylogenetics tree newick written 16 months ago by anon • 50
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988
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Replace Sequence IDs in many text files (newick format) - Change script
perl replace tree newick written 23 months ago by ibasan • 40 • updated 20 months ago by Biostar ♦♦ 20
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3
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6 follow
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Get phylogenetic tree from abundance table
phylogenetic ncbi newick written 22 months ago by David • 140
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remove all leaves from greengene tree
greengene tree newick written 2.0 years ago by sacha • 1.6k
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3
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Bootstrap values on newick tree
phylogenetics tree newick bootstraps written 2.4 years ago by ddowlin • 70 • updated 2.1 years ago by Joseph Hughes • 2.7k
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1
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Removing duplicate leaves/tips from newick tree
phylogeny pruning trees tree newick written 2.2 years ago by ovon • 20 • updated 2.2 years ago by jhc • 2.8k
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2
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744
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treefix tree output format conversion
tree-format newick written 2.4 years ago by arunprasanna83 • 30 • updated 2.4 years ago by Brice Sarver • 2.5k
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1
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how can i simplfy a newick file with 10 000 entries into a tree of only 10 entries
genome newick written 3.2 years ago by monstercolorfun • 10 • updated 2.5 years ago by Biostar ♦♦ 20
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How to convert tuple to extended Newick format in ETE3 (python)?
python format conversion newick ete3 written 2.6 years ago by hazelle64 • 0 • updated 2.6 years ago by genomax ♦ 62k
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Converting *.con.tre into Newick format
mrbayes newick posterior probability convert written 2.8 years ago by jee-wee • 0
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Using io.StringIO() with biopython Phylo parse
python phylogenetics biopython newick tree written 3.1 years ago by mbio.kyle • 300 • updated 3.0 years ago by Eric T. • 2.3k
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1
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Newick To Distance Matrix
matrix newick tree distance written 4.9 years ago by Haluk • 170 • updated 3.2 years ago by Biostar ♦♦ 20
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1
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812
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1
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Reduced versions of the 23MB tree by scripts?
phylogeny treeoflife tree newick written 3.2 years ago by monstercolorfun • 10 • updated 3.2 years ago by jhc • 2.8k
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Phylogenetic distance betwee species
phylogenetics newick trees written 3.3 years ago by Jautis • 270 • updated 3.3 years ago by jhc • 2.8k
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1.4k
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1
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Replace tip names in a newick file
format newick written 3.9 years ago by tlorin • 250 • updated 3.9 years ago by a.zielezinski ♦ 8.5k
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How to calculate sum of branch lengths between specified leaves from a Newick tree?
phylogenetics tree newick written 4.2 years ago by Kame • 10 • updated 4.2 years ago by David W ♦ 4.7k
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1.6k
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Newick tree change format of specific nodes
nodes python tree newick phlogeny written 4.4 years ago by MAK • 10 • updated 4.4 years ago by jhc • 2.8k
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Removing branch support values that meet certain requirements in a newick file
perl newick bootstrap posterior probability written 4.8 years ago by joran.martijn • 0
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1
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5 follow
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Which cut-off for collapsing this tree?
homology distance orthology collapse newick written 4.8 years ago by a1ultima • 700 • updated 4.8 years ago by Asaf ♦ 5.2k
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