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<prev • 20 results • page 1 of 1 • next >
11
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0
answers
217
views
7 follow
0
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How do I generate all possible Newick Tree permutations for a set of species given an outgroup in Python?
phylogeny python phylogenetics tree newick written 12 days ago by MrDoe777 • 50
8
votes
2
answers
371
views
2
answers
Replace Sequence IDs in many text files (newick format) - Change script
perl replace tree newick written 7 months ago by ibasan • 30 • updated 4 months ago by Biostar ♦♦ 20
1
vote
3
answers
517
views
3
answers
Get phylogenetic tree from abundance table
phylogenetic ncbi newick written 6 months ago by David • 60
0
votes
0
answers
216
views
0
answers
remove all leaves from greengene tree
greengene tree newick written 8 months ago by sacha • 820
1
vote
3
answers
607
views
3
answers
Bootstrap values on newick tree
phylogenetics tree newick bootstraps written 13 months ago by ddowlin • 50 • updated 9 months ago by Joseph Hughes • 2.2k
1
vote
1
answer
478
views
1
answer
Removing duplicate leaves/tips from newick tree
phylogeny pruning trees tree newick written 11 months ago by ovon • 10 • updated 10 months ago by jhc • 2.5k
1
vote
2
answers
385
views
2
answers
treefix tree output format conversion
tree-format newick written 12 months ago by arunprasanna83 • 10 • updated 12 months ago by Brice Sarver • 2.3k
2
votes
1
answer
631
views
1
answer
how can i simplfy a newick file with 10 000 entries into a tree of only 10 entries
genome newick written 22 months ago by monstercolorfun • 10 • updated 14 months ago by Biostar ♦♦ 20
0
votes
0
answers
422
views
0
answers
How to convert tuple to extended Newick format in ETE3 (python)?
python format conversion newick ete3 written 16 months ago by hazelle64 • 0 • updated 16 months ago by genomax ♦ 34k
0
votes
0
answers
1.1k
views
0
answers
Converting *.con.tre into Newick format
mrbayes newick posterior probability convert written 17 months ago by jee-wee • 0
3
votes
2
answers
661
views
2
answers
Using io.StringIO() with biopython Phylo parse
python phylogenetics biopython newick tree written 20 months ago by mbio.kyle • 240 • updated 20 months ago by Eric T. • 1.9k
0
votes
1
answer
1.8k
views
1
answer
Newick To Distance Matrix
matrix newick tree distance written 3.6 years ago by Haluk • 160 • updated 22 months ago by Biostar ♦♦ 20
0
votes
1
answer
501
views
1
answer
Reduced versions of the 23MB tree by scripts?
phylogeny treeoflife tree newick written 22 months ago by monstercolorfun • 10 • updated 22 months ago by jhc • 2.5k
2
votes
1
answer
716
views
1
answer
Phylogenetic distance betwee species
phylogenetics newick trees written 23 months ago by Jautis • 240 • updated 23 months ago by jhc • 2.5k
4
votes
1
answer
833
views
1
answer
Replace tip names in a newick file
format newick written 2.6 years ago by tlorin • 210 • updated 2.6 years ago by a.zielezinski ♦ 7.4k
0
votes
2
answers
2.1k
views
2
answers
How to calculate sum of branch lengths between specified leaves from a Newick tree?
phylogenetics tree newick written 2.8 years ago by Kame • 10 • updated 2.8 years ago by David W ♦ 4.6k
3
votes
2
answers
2.8k
views
2
answers
Construct Newick Tree from tab-delimited or csv file of phylogeny, preferably in Python
phylogeny python tree newick written 3.1 years ago by weslfield • 80
4
votes
1
answer
1.1k
views
1
answer
Newick tree change format of specific nodes
nodes python tree newick phlogeny written 3.1 years ago by MAK • 10 • updated 3.1 years ago by jhc • 2.5k
3
votes
2
answers
1.8k
views
2
answers
Removing branch support values that meet certain requirements in a newick file
perl newick bootstrap posterior probability written 3.5 years ago by joran.martijn • 0
2
votes
1
answer
1.2k
views
1
answer
Which cut-off for collapsing this tree?
homology distance orthology collapse newick written 3.5 years ago by a1ultima • 610 • updated 3.5 years ago by Asaf ♦ 4.5k
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