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<prev • 36 results • page 1 of 2 • next >
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Which ete3 format to parse a newick file with concordance values?
phylogenetics iqtree newick concordance factors written 2 days ago by mrmrwinter • 0
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2
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108
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
R bioconductor newick cytoscape rcy3 written 29 days ago by elliskidsjunkemail • 10
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1
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276
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1
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ETE3: error while parsing Newick tree
ete3 newick tree ete written 9 months ago by a.zielezinski ♦ 9.2k • updated 9 months ago by Mensur Dlakic • 6.0k
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3
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229
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3
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How to edit name/ID in a newick tree format
format newick written 11 months ago by imda • 10
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Replace Sequence IDs in many text files (newick format) - Change script
perl replace tree newick written 3.4 years ago by ibasan • 40 • updated 11 months ago by Biostar ♦♦ 20
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5 follow
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Convert Nexus format to Newick format
perl converter nexus newick written 2.5 years ago by ArusjakGevorgyan • 20 • updated 11 months ago by BlastedBadger • 90
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Importing Newick phylogenetic tree with ade4::newick2phylog() fails with moderate size tree
phylogenetic R ade4 newick ape written 12 months ago by ido.idobar • 10
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2
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Adding branch lengths to a topology
fasta phylogenetics newick written 16 months ago by treesandthings • 20 • updated 15 months ago by Shicheng Guo • 8.3k
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1
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1
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Reduced versions of the 23MB tree by scripts?
phylogeny treeoflife tree newick written 4.7 years ago by monstercolorfun • 10 • updated 16 months ago by Biostar ♦♦ 20
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2
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744
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Newick trees analysis software
software tree analysis newick written 17 months ago by roussine • 10 • updated 17 months ago by Joe ♦ 17k
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598
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Generate all possible bifurkating newick trees for N taxa
generate tree newick written 20 months ago by al-ash • 140
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1
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483
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1
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taxa names in phylogenetic tree
perl phylogenetics newick shell written 22 months ago by erick_rc93 • 10 • updated 22 months ago by Pierre Lindenbaum ♦ 129k
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Construct Newick Tree from tab-delimited or csv file of phylogeny, preferably in Python
phylogeny python tree newick written 5.9 years ago by weslfield • 90 • updated 24 months ago by Biostar ♦♦ 20
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1
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How does ggtree interprets branch support value (e.g bootstrap value) given as node label?
phylogenetic R ggtree newick written 2.1 years ago by Chirag Parsania • 1.8k • updated 2.1 years ago by zx8754 ♦ 9.4k
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682
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Generate all NNI-neighbours of a tree
nni phylogenetics tree newick written 2.2 years ago by phylomat • 0
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1
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732
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1
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Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 2.2 years ago by neutrinoscientist • 0 • updated 2.2 years ago by Jean-Karim Heriche ♦ 23k
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813
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PuTTY newick utilities
software error newick written 2.4 years ago by anstuteville • 0
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1
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1
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Import files in newick format with python script
import files python format newick written 2.4 years ago by ArusjakGevorgyan • 20 • updated 2.4 years ago by Selenocysteine • 600
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1
answer
976
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1
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Generating a tree (nex or nwk file) starting from msa
nexus tree newick msa written 2.8 years ago by lessismore • 890 • updated 2.8 years ago by Jean-Karim Heriche ♦ 23k
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7 follow
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How do I generate all possible Newick Tree permutations for a set of species given an outgroup in Python?
phylogeny python phylogenetics tree newick written 2.8 years ago by anonymous1192976466 • 50
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3
answers
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7 follow
3
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Get phylogenetic tree from abundance table
phylogenetic ncbi newick written 3.3 years ago by David • 160
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813
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remove all leaves from greengene tree
greengene tree newick written 3.5 years ago by sacha • 1.9k
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3
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2.5k
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3
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Bootstrap values on newick tree
phylogenetics tree newick bootstraps written 3.9 years ago by ddowlin • 70 • updated 3.6 years ago by Joseph Hughes • 2.8k
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1
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2.4k
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1
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Removing duplicate leaves/tips from newick tree
phylogeny pruning trees tree newick written 3.7 years ago by ovon • 20 • updated 3.7 years ago by jhc • 2.8k
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2
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treefix tree output format conversion
tree-format newick written 3.9 years ago by arunprasanna83 • 40 • updated 3.9 years ago by Brice Sarver • 3.5k
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1
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1.2k
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1
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how can i simplfy a newick file with 10 000 entries into a tree of only 10 entries
genome newick written 4.7 years ago by monstercolorfun • 10 • updated 4.0 years ago by Biostar ♦♦ 20
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How to convert tuple to extended Newick format in ETE3 (python)?
python format conversion newick ete3 written 4.1 years ago by hazelle64 • 0 • updated 4.1 years ago by genomax ♦ 87k
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Converting *.con.tre into Newick format
mrbayes newick posterior probability convert written 4.3 years ago by jee-wee • 0
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2
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1.6k
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2
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Using io.StringIO() with biopython Phylo parse
python phylogenetics biopython newick tree written 4.5 years ago by mbio.kyle • 360 • updated 4.5 years ago by Eric T. • 2.6k
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Newick To Distance Matrix
matrix newick tree distance written 6.4 years ago by Haluk • 170 • updated 4.6 years ago by Biostar ♦♦ 20
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