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5
votes
1
answer
180
views
1
answer
How does ggtree interprets branch support value (e.g bootstrap value) given as node label?
phylogenetic R ggtree newick written 26 days ago by Chirag Parsania • 930 • updated 19 days ago by zx8754 ♦ 4.7k
2
votes
0
answers
113
views
0
answers
Generate all NNI-neighbours of a tree
nni phylogenetics tree newick written 6 weeks ago by phylomat • 0
1
vote
1
answer
118
views
1
answer
Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 8 weeks ago by neutrinoscientist • 0 • updated 8 weeks ago by Jean-Karim Heriche ♦ 16k
0
votes
0
answers
249
views
0
answers
PuTTY newick utilities
software error newick written 4 months ago by anstuteville • 0
3
votes
1
answer
354
views
1
answer
Import files in newick format with python script
import files python format newick written 4 months ago by ArusjakGevorgyan • 20 • updated 4 months ago by Selenocysteine • 480
0
votes
1
answer
437
views
1
answer
Convert Nexus format to Newick format
perl converter nexus newick written 5 months ago by ArusjakGevorgyan • 20 • updated 5 months ago by lieven.sterck • 1.9k
0
votes
1
answer
303
views
1
answer
Generating a tree (nex or nwk file) starting from msa
nexus tree newick msa written 9 months ago by lessismore • 490 • updated 9 months ago by Jean-Karim Heriche ♦ 16k
12
votes
0
answers
581
views
7 follow
0
answers
How do I generate all possible Newick Tree permutations for a set of species given an outgroup in Python?
phylogeny python phylogenetics tree newick written 9 months ago by MrDoe777 • 50
8
votes
2
answers
664
views
2
answers
Replace Sequence IDs in many text files (newick format) - Change script
perl replace tree newick written 16 months ago by ibasan • 30 • updated 13 months ago by Biostar ♦♦ 20
2
votes
3
answers
1.3k
views
6 follow
3
answers
Get phylogenetic tree from abundance table
phylogenetic ncbi newick written 15 months ago by David • 80
0
votes
0
answers
412
views
0
answers
remove all leaves from greengene tree
greengene tree newick written 17 months ago by sacha • 1.3k
1
vote
3
answers
1.1k
views
3
answers
Bootstrap values on newick tree
phylogenetics tree newick bootstraps written 22 months ago by ddowlin • 50 • updated 18 months ago by Joseph Hughes • 2.6k
1
vote
1
answer
927
views
1
answer
Removing duplicate leaves/tips from newick tree
phylogeny pruning trees tree newick written 20 months ago by ovon • 10 • updated 20 months ago by jhc • 2.7k
1
vote
2
answers
610
views
2
answers
treefix tree output format conversion
tree-format newick written 21 months ago by arunprasanna83 • 20 • updated 21 months ago by Brice Sarver • 2.4k
2
votes
1
answer
813
views
1
answer
how can i simplfy a newick file with 10 000 entries into a tree of only 10 entries
genome newick written 2.6 years ago by monstercolorfun • 10 • updated 23 months ago by Biostar ♦♦ 20
0
votes
0
answers
692
views
0
answers
How to convert tuple to extended Newick format in ETE3 (python)?
python format conversion newick ete3 written 2.1 years ago by hazelle64 • 0 • updated 2.1 years ago by genomax ♦ 52k
0
votes
0
answers
1.8k
views
0
answers
Converting *.con.tre into Newick format
mrbayes newick posterior probability convert written 2.2 years ago by jee-wee • 0
3
votes
2
answers
910
views
2
answers
Using io.StringIO() with biopython Phylo parse
python phylogenetics biopython newick tree written 2.5 years ago by mbio.kyle • 260 • updated 2.5 years ago by Eric T. • 2.2k
0
votes
1
answer
2.2k
views
1
answer
Newick To Distance Matrix
matrix newick tree distance written 4.3 years ago by Haluk • 170 • updated 2.6 years ago by Biostar ♦♦ 20
0
votes
1
answer
693
views
1
answer
Reduced versions of the 23MB tree by scripts?
phylogeny treeoflife tree newick written 2.6 years ago by monstercolorfun • 10 • updated 2.6 years ago by jhc • 2.7k
2
votes
1
answer
920
views
1
answer
Phylogenetic distance betwee species
phylogenetics newick trees written 2.7 years ago by Jautis • 260 • updated 2.7 years ago by jhc • 2.7k
4
votes
1
answer
1.2k
views
1
answer
Replace tip names in a newick file
format newick written 3.3 years ago by tlorin • 240 • updated 3.3 years ago by a.zielezinski ♦ 8.3k
0
votes
2
answers
2.6k
views
2
answers
How to calculate sum of branch lengths between specified leaves from a Newick tree?
phylogenetics tree newick written 3.6 years ago by Kame • 10 • updated 3.6 years ago by David W ♦ 4.7k
3
votes
2
answers
3.5k
views
2
answers
Construct Newick Tree from tab-delimited or csv file of phylogeny, preferably in Python
phylogeny python tree newick written 3.8 years ago by weslfield • 90
4
votes
1
answer
1.4k
views
1
answer
Newick tree change format of specific nodes
nodes python tree newick phlogeny written 3.9 years ago by MAK • 10 • updated 3.9 years ago by jhc • 2.7k
3
votes
2
answers
2.2k
views
2
answers
Removing branch support values that meet certain requirements in a newick file
perl newick bootstrap posterior probability written 4.2 years ago by joran.martijn • 0
5
votes
1
answer
1.5k
views
5 follow
1
answer
Which cut-off for collapsing this tree?
homology distance orthology collapse newick written 4.2 years ago by a1ultima • 680 • updated 4.2 years ago by Asaf ♦ 4.8k
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