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<prev • 19 results • page 1 of 1 • next >
8
votes
2
answers
323
views
2
answers
Replace Sequence IDs in many text files (newick format) - Change script
perl replace tree newick written 5 months ago by ibasan • 30 • updated 10 weeks ago by Biostar ♦♦ 20
1
vote
3
answers
371
views
3
answers
Get phylogenetic tree from abundance table
phylogenetic ncbi newick written 3 months ago by David • 50
0
votes
0
answers
171
views
0
answers
remove all leaves from greengene tree
greengene tree newick written 6 months ago by sacha • 770
1
vote
3
answers
528
views
3
answers
Bootstrap values on newick tree
phylogenetics tree newick bootstraps written 10 months ago by ddowlin • 30 • updated 7 months ago by Joseph Hughes • 2.1k
1
vote
1
answer
408
views
1
answer
Removing duplicate leaves/tips from newick tree
phylogeny pruning trees tree newick written 8 months ago by ovon • 10 • updated 8 months ago by jhc • 2.5k
1
vote
2
answers
347
views
2
answers
treefix tree output format conversion
tree-format newick written 10 months ago by arunprasanna83 • 10 • updated 10 months ago by Brice Sarver • 2.3k
2
votes
1
answer
600
views
1
answer
how can i simplfy a newick file with 10 000 entries into a tree of only 10 entries
genome newick written 20 months ago by monstercolorfun • 10 • updated 12 months ago by Biostar ♦♦ 20
0
votes
0
answers
382
views
0
answers
How to convert tuple to extended Newick format in ETE3 (python)?
python format conversion newick ete3 written 13 months ago by hazelle64 • 0 • updated 13 months ago by genomax ♦ 32k
0
votes
0
answers
946
views
0
answers
Converting *.con.tre into Newick format
mrbayes newick posterior probability convert written 15 months ago by jee-wee • 0
3
votes
2
answers
608
views
2
answers
Using io.StringIO() with biopython Phylo parse
python phylogenetics biopython newick tree written 18 months ago by mbio.kyle • 230 • updated 18 months ago by Eric T. • 1.8k
0
votes
1
answer
1.7k
views
1
answer
Newick To Distance Matrix
matrix newick tree distance written 3.4 years ago by Haluk • 160 • updated 20 months ago by Biostar ♦♦ 20
0
votes
1
answer
451
views
1
answer
Reduced versions of the 23MB tree by scripts?
phylogeny treeoflife tree newick written 20 months ago by monstercolorfun • 10 • updated 20 months ago by jhc • 2.5k
2
votes
1
answer
677
views
1
answer
Phylogenetic distance betwee species
phylogenetics newick trees written 21 months ago by Jautis • 240 • updated 21 months ago by jhc • 2.5k
4
votes
1
answer
778
views
1
answer
Replace tip names in a newick file
format newick written 2.4 years ago by tlorin • 170 • updated 2.4 years ago by a.zielezinski ♦ 7.2k
0
votes
2
answers
2.0k
views
2
answers
How to calculate sum of branch lengths between specified leaves from a Newick tree?
phylogenetics tree newick written 2.7 years ago by Kame • 10 • updated 2.7 years ago by David W ♦ 4.6k
3
votes
2
answers
2.7k
views
2
answers
Construct Newick Tree from tab-delimited or csv file of phylogeny, preferably in Python
phylogeny python tree newick written 2.9 years ago by weslfield • 80
4
votes
1
answer
1.0k
views
1
answer
Newick tree change format of specific nodes
nodes python tree newick phlogeny written 2.9 years ago by MAK • 10 • updated 2.9 years ago by jhc • 2.5k
3
votes
2
answers
1.7k
views
2
answers
Removing branch support values that meet certain requirements in a newick file
perl newick bootstrap posterior probability written 3.3 years ago by joran.martijn • 0
2
votes
1
answer
1.2k
views
1
answer
Which cut-off for collapsing this tree?
homology distance orthology collapse newick written 3.3 years ago by a1ultima • 610 • updated 3.3 years ago by Asaf ♦ 4.1k
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