0
votes
0
replies
29
views
0
votes
2
replies
117
views
0
votes
0
replies
50
views
0
votes
0
replies
54
views
0
votes
1
reply
97
views
0
votes
0
replies
80
views
updated 17 hours ago by
Ram
43k
•
written 1 day ago by
deepak180001
•
0
0
votes
1
reply
123
views
0
votes
1
reply
119
views
0
votes
1
reply
135
views
updated 16 hours ago by
Thanujay S
•
0
•
written 1 day ago by
yahn
•
0
0
votes
2
replies
171
views
2
votes
2
replies
2.6k
views
Recent Locations •
All
Russia, 3 minutes ago
United States, 4 minutes ago
Whitefish, MT, 5 minutes ago
UCLA, 6 minutes ago
Australia, 7 minutes ago
United States, 10 minutes ago
United States, 14 minutes ago
Recent Awards •
All
Autobiographer to
Mathew
▴
20
Commentator to
dsull
★
6.0k
Scholar to
BioinfGuru
★
1.7k
Popular Question to
drajangirija
•
0
Popular Question to
Thanujay S
•
0
Popular Question to
SHN
▴
40
Popular Question to
Rob
▴
170
Recent Replies
Comment: Design matrix Differential expression analysis
by
Gordon Smyth
★
7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1))
It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
▴
10
Hi Mathew,
The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
by
Mathew
▴
20
Hi,
I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data
by
Mathew
▴
20
Hi,
You asked three questions so I will attempt to help the best I can
**What should be the optimal GC score cutoff**
It sounds li…
Comment: Design matrix Differential expression analysis
by
SHN
▴
40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx
by
vjanve
•
0
I ran into same issue of "duplicated gene symbol(s)":
1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, :
22292 dup…
Comment: creating batch colum for batch correction
by
Expert
▴
10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction
by
ATpoint
82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Segmentation error while using a tool
by
Ruqaiya
•
0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool
by
Ruqaiya
•
0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool
by
Mensur Dlakic
★
27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool
by
Thanujay S
•
0
Hey @Ruqaiya!
Can you please give more details on why smalt is opted here?
According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA
by
Thanujay S
•
0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool
by
Ruqaiya
•
0
I tried the 2nd option only.
I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
Traffic: 1322 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6