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<prev • 43 results • page 1 of 2 • next >
3
votes
1
answer
67
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1
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Hypothetical protein in Prokka
genome assembly prokka written 3 days ago by mauricio.morales • 0 • updated 2 days ago by Mensur Dlakic • 6.5k
0
votes
0
answers
847
views
0
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Annotate recombination regions
genome annotation recombination regions prokka written 4.3 years ago by natasha • 100 • updated 9 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
124
views
1
answer
rename the contents of a file
prokka sequencing written 3 months ago by Bioinfosenhaji • 20 • updated 3 months ago by Joe ♦ 18k
1
vote
1
answer
185
views
1
answer
help me creating Prokka custom database
annotation database prokka virus written 3 months ago by tasbd4 • 0 • updated 3 months ago by Joe ♦ 18k
1
vote
0
answers
142
views
0
answers
gene toxin extract by prokka
annotation prokka genomics written 4 months ago by Bioinfosenhaji • 20
0
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0
answers
223
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0
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problem in launching prokka
genome next-gen prokka sequencing written 5 months ago by Bioinfosenhaji • 20 • updated 5 months ago by Asaf ♦ 8.4k
0
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0
answers
366
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0
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extract .gff files from prokka outputs
genome prokka written 5 months ago by Bioinfosenhaji • 20
3
votes
0
answers
160
views
0
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Gene Cluster Annotation
genome annotation prokka mauve gene written 6 months ago by genome_man • 10
3
votes
1
answer
180
views
1
answer
Gene Set Enrichment Analysis of RNA-seq data based on prokka annotated genomes
cog gsea prokka rna-seq written 6 months ago by viktorht • 0 • updated 6 months ago by Asaf ♦ 8.4k
1
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3
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4.0k
views
5 follow
3
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Problem with Prokka to run tbl2asn
galaxy prokka written 2.6 years ago by vmevada102 • 20 • updated 8 months ago by onestop_data • 260
0
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0
answers
245
views
0
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Problems with refseq annotation when running Islandpath-DIMOB
software error islandpath-dimob bacteria prokka written 8 months ago by hugo.avila • 150
0
votes
0
answers
221
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0
answers
Finding depth of genes
samtools snakemake prokka depth written 11 months ago by Hansen_869 • 20 • updated 9 months ago by Biostar ♦♦ 20
1
vote
1
answer
370
views
1
answer
Prokka Python Script for Gene Annotation
python annotation script prokka linux written 9 months ago by Fid_o • 20 • updated 9 months ago by Mensur Dlakic • 6.5k
4
votes
1
answer
492
views
1
answer
Convert nucleotide fasta of contigs to protein sequence genbank
fasta nucleotide protein genbank prokka written 9 months ago by claping • 0
2
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1
answer
268
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1
answer
Where does Prokka take EC numbers from?
ec number prokka annotation written 9 months ago by fyfes • 20
0
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1
answer
522
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1
answer
Mapping Gene Annotations to COG Classifications
gene annotation cog prokka kegg written 10 months ago by ksipes • 0 • updated 10 months ago by Mensur Dlakic • 6.5k
2
votes
0
answers
337
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0
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Determine all "mobile DNAs" in an assembled bacteria genome (using something like Prokka)
bacteria mobiledna prokka written 10 months ago by suzuBell • 60 • updated 10 months ago by Biostar ♦♦ 20
2
votes
0
answers
324
views
0
answers
Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 10 months ago by claping • 0
1
vote
0
answers
270
views
0
answers
Detecting variants in mapped reads against 16S rRNA reference sequence
rrna variant prokka written 10 months ago by claping • 0
5
votes
2
answers
346
views
6 follow
2
answers
Linking bacterial taxonomy to predicted genes with Prokka
prokka bwa maxbin written 10 months ago by Hansen_869 • 20
9
votes
3
answers
519
views
8 follow
3
answers
Determine number and length of plasmids in bacterial genome (using something like Prokka)
plasmid bacteria prokka written 10 months ago by suzuBell • 60 • updated 10 months ago by hafiz.talhamalik • 240
0
votes
1
answer
833
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1
answer
Using Eggnog-mapper to categorize genes according to OG, without gene prediction.
eggnog prokka annotation written 11 months ago by Hansen_869 • 20 • updated 11 months ago by Carambakaracho • 2.2k
0
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0
answers
288
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0
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Interpreting bam-files from Prokka annotation
bam samtools prokka bwa written 11 months ago by Hansen_869 • 20
3
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1
answer
2.0k
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7 follow
1
answer
Issue with version of makeblastdb during Prokka installation
makeblastdb prokka written 15 months ago by dongyun.jung • 0 • updated 13 months ago by pehenriquejp • 0
8
votes
1
answer
640
views
6 follow
1
answer
Programs for bacterial gene prediction/annotation for nanopore assembly?
annotation gene prediction nanopore prokka glimmer written 16 months ago by BioinformaticsLad • 160 • updated 16 months ago by predeus • 1.4k
1
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0
answers
737
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6 follow
0
answers
Prokka Annotation for Bacterial Transcriptomes
trinity bacteria prokka annotation written 17 months ago by gabriel.jabud • 40 • updated 17 months ago by natasha.sernova • 3.7k
0
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1
answer
930
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1
answer
Prokka setupdb issue
annotation contigs prokka assembly written 17 months ago by DanielC • 120
0
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0
answers
767
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0
answers
Is there a way to run RAST annotation locally?
annotation rast local prokka bacterial written 18 months ago by gabriel.jabud • 40
0
votes
0
answers
643
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0
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Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
annotation transcriptome plant prokka rast written 22 months ago by uk_plant_parasite_genome • 0 • updated 20 months ago by Biostar ♦♦ 20
2
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0
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735
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0
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 22 months ago by jeetsahu • 10 • updated 20 months ago by Biostar ♦♦ 20
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