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<prev • 31 results • page 1 of 2 • next >
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Mapping Gene Annotations to COG Classifications
gene annotation cog prokka kegg written 8 days ago by ksipes • 0 • updated 8 days ago by Mensur Dlakic • 2.2k
2
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0
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122
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Determine all "mobile DNAs" in an assembled bacteria genome (using something like Prokka)
bacteria mobiledna prokka written 22 days ago by suzuBell • 40 • updated 10 days ago by Biostar ♦♦ 20
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0
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99
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Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 15 days ago by clapin • 0
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75
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Detecting variants in mapped reads against 16S rRNA reference sequence
rrna variant prokka written 15 days ago by clapin • 0
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2
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118
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6 follow
2
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Linking bacterial taxonomy to predicted genes with Prokka
prokka bwa maxbin written 17 days ago by Hansen_869 • 10
9
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3
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189
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8 follow
3
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Determine number and length of plasmids in bacterial genome (using something like Prokka)
plasmid bacteria prokka written 22 days ago by suzuBell • 40 • updated 21 days ago by hafiz.talhamalik • 210
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1
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140
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1
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Using Eggnog-mapper to categorize genes according to OG, without gene prediction.
eggnog prokka annotation written 24 days ago by Hansen_869 • 10 • updated 24 days ago by Carambakaracho • 1.9k
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116
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Interpreting bam-files from Prokka annotation
bam samtools prokka bwa written 28 days ago by Hansen_869 • 10
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100
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Finding depth of genes
samtools snakemake prokka depth written 29 days ago by Hansen_869 • 10
2
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1
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724
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7 follow
1
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Issue with version of makeblastdb during Prokka installation
makeblastdb prokka written 4 months ago by dongyun.jung • 0 • updated 3 months ago by pehenriquejp • 0
8
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1
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297
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6 follow
1
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Programs for bacterial gene prediction/annotation for nanopore assembly?
annotation gene prediction nanopore prokka glimmer written 5 months ago by BioinformaticsLad • 140 • updated 5 months ago by predeus • 1.3k
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383
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Prokka Annotation for Bacterial Transcriptomes
trinity bacteria prokka annotation written 7 months ago by gabriel.jabud • 30 • updated 6 months ago by natasha.sernova • 3.6k
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1
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440
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1
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Prokka setupdb issue
annotation contigs prokka assembly written 7 months ago by DanielC • 100
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291
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Is there a way to run RAST annotation locally?
annotation rast local prokka bacterial written 8 months ago by gabriel.jabud • 30
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417
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Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
annotation transcriptome plant prokka rast written 12 months ago by uk_plant_parasite_genome • 0 • updated 10 months ago by Biostar ♦♦ 20
2
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0
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467
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 12 months ago by jeetsahu • 10 • updated 10 months ago by Biostar ♦♦ 20
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1
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451
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1
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Is Prokka giving me an inaccurate number of genes?
software error annotation prokka gene assembly written 12 months ago by zuhaibzulfiqarahmed • 0 • updated 12 months ago by h.mon ♦ 28k
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615
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Thousands of contigs in E.coli assembly
genome assembly contigs prokka written 14 months ago by vitorgomesbio • 0 • updated 14 months ago by Biostar ♦♦ 20
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1
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952
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1
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Prokka bacteria genome annotation
prokka written 15 months ago by agata88 • 790
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1
answer
2.5k
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7 follow
1
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Annotation with Prokka or RAST.
annotation prokka written 16 months ago by lokraj2003 • 80
2
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1
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634
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1
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Are there any working GNU parallel or similar Shell code examples on how to run Pilon, Prokka, VT and Snpeff tools on a batch of input files?
shell parallel snpeff gnu prokka written 19 months ago by england_bioinformatics_team • 20 • updated 19 months ago by Joe ♦ 15k
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Problem with Prokka to run tbl2asn
galaxy prokka written 21 months ago by vmevada102 • 20 • updated 20 months ago by aaron.petkau • 0
5
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2
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1.1k
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Annotation with Prokka - small ORFs and genus-specific DB?
annotation bacteria prokka written 22 months ago by predeus • 1.3k • updated 22 months ago by Asaf ♦ 6.5k
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500
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 2.1 years ago by bioinformatics_bel • 20
4
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2
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654
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Has anyone tried to run SNPEff, Bedtools or Prokka with GNU parallel or a similar batch engine?
bedtools parallel snpeff gnu prokka written 2.1 years ago by bioinformatics_bel • 20 • updated 2.1 years ago by WouterDeCoster ♦ 42k
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What software is a good standalone alternative to the Prokka genome annotation software?
software annotation prokka written 2.1 years ago by bioinformatics_bel • 20 • updated 2.1 years ago by h.mon ♦ 28k
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696
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How to fix Prokka`s annotation software error?
fasta annotation prokka software error written 2.1 years ago by bioinformatics_bel • 20 • updated 2.1 years ago by Matt Shirley ♦ 9.2k
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PROKKA: File .err - why all my features have inconsistent gene
genome annotation prokka written 2.5 years ago by bzg • 40
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2.5k
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2
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Installation issues with hmmer2
hmmer2 hmmsearch prokka hmmer written 5.1 years ago by JV • 380 • updated 3.1 years ago by RamRS ♦ 24k
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714
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Annotate recombination regions
genome annotation recombination regions prokka written 3.4 years ago by natasha • 100
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