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<prev • 18 results • page 1 of 1 • next >
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Is there a way to run RAST annotation locally?
annotation rast local prokka bacterial written 10 days ago by gabriel.jabud • 0
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173
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Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
annotation transcriptome plant prokka rast written 4 months ago by uk_plant_parasite_genome • 0 • updated 8 weeks ago by Biostar ♦♦ 20
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232
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 4 months ago by jeetsahu • 0 • updated 10 weeks ago by Biostar ♦♦ 20
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1
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207
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1
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Is Prokka giving me an inaccurate number of genes?
software error annotation prokka gene assembly written 4 months ago by zuhaibzulfiqarahmed • 0 • updated 4 months ago by h.mon ♦ 24k
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415
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Thousands of contigs in E.coli assembly
genome assembly contigs prokka written 6 months ago by vitorgomesbio • 0 • updated 6 months ago by Biostar ♦♦ 20
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501
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1
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Prokka bacteria genome annotation
prokka written 7 months ago by agata88 • 770
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7 follow
1
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Annotation with Prokka or RAST.
annotation prokka written 8 months ago by lokraj2003 • 40
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1
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417
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1
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Are there any working GNU parallel or similar Shell code examples on how to run Pilon, Prokka, VT and Snpeff tools on a batch of input files?
shell parallel snpeff gnu prokka written 11 months ago by england_bioinformatics_team • 20 • updated 11 months ago by jrj.healey ♦ 11k
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Problem with Prokka to run tbl2asn
galaxy prokka written 12 months ago by vmevada102 • 20 • updated 12 months ago by aaron.petkau • 0
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Annotation with Prokka - small ORFs and genus-specific DB?
annotation bacteria prokka written 13 months ago by predeus • 860 • updated 13 months ago by Asaf ♦ 5.3k
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389
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 16 months ago by bioinformatics_bel • 20
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Has anyone tried to run SNPEff, Bedtools or Prokka with GNU parallel or a similar batch engine?
bedtools parallel snpeff gnu prokka written 16 months ago by bioinformatics_bel • 20 • updated 16 months ago by WouterDeCoster ♦ 37k
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What software is a good standalone alternative to the Prokka genome annotation software?
software annotation prokka written 17 months ago by bioinformatics_bel • 20 • updated 17 months ago by h.mon ♦ 24k
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556
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How to fix Prokka`s annotation software error?
fasta annotation prokka software error written 17 months ago by bioinformatics_bel • 20 • updated 17 months ago by Matt Shirley ♦ 8.9k
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682
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PROKKA: File .err - why all my features have inconsistent gene
genome annotation prokka written 22 months ago by bzg • 30
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2.2k
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Installation issues with hmmer2
hmmer2 hmmsearch prokka hmmer written 4.4 years ago by JV • 380 • updated 2.4 years ago by RamRS ♦ 20k
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Annotate recombination regions
genome annotation recombination regions prokka written 2.8 years ago by natasha • 100
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Prokka not running on Biolinux8
genome annotation prokka written 4.4 years ago by dago • 2.5k
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