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<prev • 22 results • page 1 of 1 • next >
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5 follow
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Issue with version of makeblastdb during Prokka installation
makeblastdb prokka written 17 days ago by dongyun.jung • 0 • updated 17 days ago by Mensur Dlakic • 210
8
votes
1
answer
148
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6 follow
1
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Programs for bacterial gene prediction/annotation for nanopore assembly?
annotation gene prediction nanopore prokka glimmer written 7 weeks ago by BioinformaticsLad • 130 • updated 7 weeks ago by predeus • 1.1k
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226
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Prokka Annotation for Bacterial Transcriptomes
trinity bacteria prokka annotation written 11 weeks ago by gabriel.jabud • 20 • updated 11 weeks ago by natasha.sernova • 3.5k
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1
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256
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1
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Prokka setupdb issue
annotation contigs prokka assembly written 3 months ago by DanielC • 90
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197
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0
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Is there a way to run RAST annotation locally?
annotation rast local prokka bacterial written 4 months ago by gabriel.jabud • 20
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311
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Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
annotation transcriptome plant prokka rast written 8 months ago by uk_plant_parasite_genome • 0 • updated 5 months ago by Biostar ♦♦ 20
2
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0
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346
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 8 months ago by jeetsahu • 10 • updated 6 months ago by Biostar ♦♦ 20
0
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1
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330
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1
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Is Prokka giving me an inaccurate number of genes?
software error annotation prokka gene assembly written 7 months ago by zuhaibzulfiqarahmed • 0 • updated 7 months ago by h.mon ♦ 26k
1
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0
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512
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0
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Thousands of contigs in E.coli assembly
genome assembly contigs prokka written 10 months ago by vitorgomesbio • 0 • updated 10 months ago by Biostar ♦♦ 20
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1
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752
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1
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Prokka bacteria genome annotation
prokka written 11 months ago by agata88 • 790
5
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1
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1.8k
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7 follow
1
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Annotation with Prokka or RAST.
annotation prokka written 12 months ago by lokraj2003 • 70
2
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1
answer
512
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1
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Are there any working GNU parallel or similar Shell code examples on how to run Pilon, Prokka, VT and Snpeff tools on a batch of input files?
shell parallel snpeff gnu prokka written 15 months ago by england_bioinformatics_team • 20 • updated 15 months ago by jrj.healey ♦ 13k
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Problem with Prokka to run tbl2asn
galaxy prokka written 16 months ago by vmevada102 • 20 • updated 16 months ago by aaron.petkau • 0
5
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2
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874
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Annotation with Prokka - small ORFs and genus-specific DB?
annotation bacteria prokka written 17 months ago by predeus • 1.1k • updated 17 months ago by Asaf ♦ 6.1k
0
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445
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 20 months ago by bioinformatics_bel • 20
4
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2
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582
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Has anyone tried to run SNPEff, Bedtools or Prokka with GNU parallel or a similar batch engine?
bedtools parallel snpeff gnu prokka written 20 months ago by bioinformatics_bel • 20 • updated 20 months ago by WouterDeCoster ♦ 40k
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What software is a good standalone alternative to the Prokka genome annotation software?
software annotation prokka written 20 months ago by bioinformatics_bel • 20 • updated 20 months ago by h.mon ♦ 26k
0
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1
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627
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1
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How to fix Prokka`s annotation software error?
fasta annotation prokka software error written 20 months ago by bioinformatics_bel • 20 • updated 20 months ago by Matt Shirley ♦ 9.0k
0
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797
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PROKKA: File .err - why all my features have inconsistent gene
genome annotation prokka written 2.2 years ago by bzg • 40
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2.4k
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Installation issues with hmmer2
hmmer2 hmmsearch prokka hmmer written 4.7 years ago by JV • 380 • updated 2.7 years ago by RamRS ♦ 22k
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Annotate recombination regions
genome annotation recombination regions prokka written 3.1 years ago by natasha • 100
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4
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2.8k
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Prokka not running on Biolinux8
genome annotation prokka written 4.7 years ago by dago • 2.5k
<prev • 22 results • page 1 of 1 • next >
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