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<prev • 47 results • page 1 of 2 • next >
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Tool: Annotation tools (prokaryotes): prokka vs eggnog
assembly tool eggnog prokka annotations hmm written 7 weeks ago by willnotburn • 40
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269
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Prokka Annotation or NCBI Annotation
ncbi prokka genbank written 10 weeks ago by Optimist • 130 • updated 10 weeks ago by Mensur Dlakic • 8.3k
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406
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The sequence databases have not been indexed. Please run 'prokka --setupdb' first.
prokka indexing sequence database written 3 months ago by JAB • 10
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459
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5 follow
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Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 14 months ago by claping • 0 • updated 3 months ago by appiahv • 0
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Tool: Fix Prokka fragmented gene annotations - Long read assembly
gene annotation tool prokka fragmented written 4 months ago by Juke34 • 5.0k
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267
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Hypothetical protein in Prokka
genome assembly prokka written 4 months ago by mauricio.morales • 0 • updated 4 months ago by Mensur Dlakic • 8.3k
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897
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Annotate recombination regions
genome annotation recombination regions prokka written 4.6 years ago by natasha • 100 • updated 6 months ago by Biostar ♦♦ 20
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184
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rename the contents of a file
prokka sequencing written 7 months ago by Bioinfosenhaji • 20 • updated 7 months ago by Joe ♦ 18k
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420
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help me creating Prokka custom database
annotation database prokka virus written 7 months ago by tasbd4 • 0 • updated 7 months ago by Joe ♦ 18k
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215
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gene toxin extract by prokka
annotation prokka genomics written 8 months ago by Bioinfosenhaji • 20
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568
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problem in launching prokka
genome next-gen prokka sequencing written 9 months ago by Bioinfosenhaji • 20 • updated 9 months ago by Asaf ♦ 8.5k
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556
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extract .gff files from prokka outputs
genome prokka written 10 months ago by Bioinfosenhaji • 20
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264
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Gene Cluster Annotation
genome annotation prokka mauve gene written 10 months ago by genome_man • 10
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Gene Set Enrichment Analysis of RNA-seq data based on prokka annotated genomes
cog gsea prokka rna-seq written 10 months ago by viktorht • 0 • updated 10 months ago by Asaf ♦ 8.5k
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Problem with Prokka to run tbl2asn
galaxy prokka written 2.9 years ago by vmevada102 • 20 • updated 12 months ago by onestop_data • 250
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Problems with refseq annotation when running Islandpath-DIMOB
software error islandpath-dimob bacteria prokka written 12 months ago by hugo.avila • 180
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Finding depth of genes
samtools snakemake prokka depth written 15 months ago by Hansen_869 • 20 • updated 13 months ago by Biostar ♦♦ 20
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Prokka Python Script for Gene Annotation
python annotation script prokka linux written 13 months ago by Fid_o • 20 • updated 13 months ago by Mensur Dlakic • 8.3k
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Convert nucleotide fasta of contigs to protein sequence genbank
fasta nucleotide protein genbank prokka written 13 months ago by claping • 0
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Where does Prokka take EC numbers from?
ec number prokka annotation written 13 months ago by fyfes • 30
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Mapping Gene Annotations to COG Classifications
gene annotation cog prokka kegg written 14 months ago by ksipes • 0 • updated 14 months ago by Mensur Dlakic • 8.3k
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Determine all "mobile DNAs" in an assembled bacteria genome (using something like Prokka)
bacteria mobiledna prokka written 15 months ago by suzuBell • 60 • updated 14 months ago by Biostar ♦♦ 20
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Detecting variants in mapped reads against 16S rRNA reference sequence
rrna variant prokka written 14 months ago by claping • 0
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6 follow
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Linking bacterial taxonomy to predicted genes with Prokka
prokka bwa maxbin written 14 months ago by Hansen_869 • 20
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8 follow
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Determine number and length of plasmids in bacterial genome (using something like Prokka)
plasmid bacteria prokka written 15 months ago by suzuBell • 60 • updated 15 months ago by hafiz.talhamalik • 250
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Using Eggnog-mapper to categorize genes according to OG, without gene prediction.
eggnog prokka annotation written 15 months ago by Hansen_869 • 20 • updated 15 months ago by Carambakaracho • 2.3k
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364
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Interpreting bam-files from Prokka annotation
bam samtools prokka bwa written 15 months ago by Hansen_869 • 20
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7 follow
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Issue with version of makeblastdb during Prokka installation
makeblastdb prokka written 19 months ago by dongyun.jung • 0 • updated 17 months ago by pehenriquejp • 0
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Programs for bacterial gene prediction/annotation for nanopore assembly?
annotation gene prediction nanopore prokka glimmer written 20 months ago by BioinformaticsLad • 160 • updated 20 months ago by predeus • 1.4k
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Prokka Annotation for Bacterial Transcriptomes
trinity bacteria prokka annotation written 21 months ago by gabriel.jabud • 40 • updated 21 months ago by natasha.sernova • 3.8k
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