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<prev • 35 results • page 1 of 2 • next >
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Problem with Prokka to run tbl2asn
galaxy prokka written 24 months ago by vmevada102 • 20 • updated 29 days ago by onestop_data • 160
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0
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147
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0
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Problems with refseq annotation when running Islandpath-DIMOB
software error islandpath-dimob bacteria prokka written 4 weeks ago by hugo.avila • 10
0
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0
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154
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0
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Finding depth of genes
samtools snakemake prokka depth written 4 months ago by Hansen_869 • 20 • updated 8 weeks ago by Biostar ♦♦ 20
1
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1
answer
162
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1
answer
Prokka Python Script for Gene Annotation
python annotation script prokka linux written 10 weeks ago by Fido • 10 • updated 10 weeks ago by Mensur Dlakic • 3.4k
4
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1
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255
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1
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Convert nucleotide fasta of contigs to protein sequence genbank
fasta nucleotide protein genbank prokka written 11 weeks ago by claping • 0
2
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1
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149
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1
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Where does Prokka take EC numbers from?
ec number prokka annotation written 10 weeks ago by zuzanna.karwowska • 20
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1
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191
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1
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Mapping Gene Annotations to COG Classifications
gene annotation cog prokka kegg written 3 months ago by ksipes • 0 • updated 3 months ago by Mensur Dlakic • 3.4k
2
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0
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187
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0
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Determine all "mobile DNAs" in an assembled bacteria genome (using something like Prokka)
bacteria mobiledna prokka written 3 months ago by suzuBell • 40 • updated 3 months ago by Biostar ♦♦ 20
2
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0
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199
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0
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Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 3 months ago by claping • 0
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150
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0
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Detecting variants in mapped reads against 16S rRNA reference sequence
rrna variant prokka written 3 months ago by claping • 0
5
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2
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182
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6 follow
2
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Linking bacterial taxonomy to predicted genes with Prokka
prokka bwa maxbin written 3 months ago by Hansen_869 • 20
9
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3
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311
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8 follow
3
answers
Determine number and length of plasmids in bacterial genome (using something like Prokka)
plasmid bacteria prokka written 3 months ago by suzuBell • 40 • updated 3 months ago by hafiz.talhamalik • 230
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1
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294
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1
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Using Eggnog-mapper to categorize genes according to OG, without gene prediction.
eggnog prokka annotation written 3 months ago by Hansen_869 • 20 • updated 3 months ago by Carambakaracho • 2.0k
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193
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0
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Interpreting bam-files from Prokka annotation
bam samtools prokka bwa written 3 months ago by Hansen_869 • 20
3
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1
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1.2k
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7 follow
1
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Issue with version of makeblastdb during Prokka installation
makeblastdb prokka written 7 months ago by dongyun.jung • 0 • updated 6 months ago by pehenriquejp • 0
8
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1
answer
394
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6 follow
1
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Programs for bacterial gene prediction/annotation for nanopore assembly?
annotation gene prediction nanopore prokka glimmer written 9 months ago by BioinformaticsLad • 150 • updated 8 months ago by predeus • 1.3k
0
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0
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487
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0
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Prokka Annotation for Bacterial Transcriptomes
trinity bacteria prokka annotation written 10 months ago by gabriel.jabud • 30 • updated 10 months ago by natasha.sernova • 3.7k
0
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1
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567
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1
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Prokka setupdb issue
annotation contigs prokka assembly written 10 months ago by DanielC • 100
0
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0
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397
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0
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Is there a way to run RAST annotation locally?
annotation rast local prokka bacterial written 11 months ago by gabriel.jabud • 30
0
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481
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0
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Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
annotation transcriptome plant prokka rast written 15 months ago by uk_plant_parasite_genome • 0 • updated 13 months ago by Biostar ♦♦ 20
2
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555
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 15 months ago by jeetsahu • 10 • updated 13 months ago by Biostar ♦♦ 20
0
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1
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532
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1
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Is Prokka giving me an inaccurate number of genes?
software error annotation prokka gene assembly written 15 months ago by zuhaibzulfiqarahmed • 0 • updated 15 months ago by h.mon ♦ 29k
1
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0
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708
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0
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Thousands of contigs in E.coli assembly
genome assembly contigs prokka written 18 months ago by vitorgomesbio • 0 • updated 17 months ago by Biostar ♦♦ 20
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1
answer
1.1k
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1
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Prokka bacteria genome annotation
prokka written 18 months ago by agata88 • 790
5
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1
answer
2.9k
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7 follow
1
answer
Annotation with Prokka or RAST.
annotation prokka written 19 months ago by lokraj2003 • 80
2
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1
answer
710
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1
answer
Are there any working GNU parallel or similar Shell code examples on how to run Pilon, Prokka, VT and Snpeff tools on a batch of input files?
shell parallel snpeff gnu prokka written 22 months ago by england_bioinformatics_team • 20 • updated 22 months ago by Joe ♦ 16k
5
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2
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1.2k
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2
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Annotation with Prokka - small ORFs and genus-specific DB?
annotation bacteria prokka written 2.1 years ago by predeus • 1.3k • updated 2.1 years ago by Asaf ♦ 7.0k
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545
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 2.3 years ago by bioinformatics_bel • 20
4
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2
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701
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2
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Has anyone tried to run SNPEff, Bedtools or Prokka with GNU parallel or a similar batch engine?
bedtools parallel snpeff gnu prokka written 2.3 years ago by bioinformatics_bel • 20 • updated 2.3 years ago by WouterDeCoster ♦ 43k
1
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What software is a good standalone alternative to the Prokka genome annotation software?
software annotation prokka written 2.3 years ago by bioinformatics_bel • 20 • updated 2.3 years ago by h.mon ♦ 29k
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