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Is Prokka giving me an inaccurate number of genes?
software error annotation prokka gene assembly written 21 days ago by zuhaibzulfiqarahmed • 0 • updated 21 days ago by h.mon ♦ 21k
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76
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Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
annotation transcriptome plant prokka rast written 27 days ago by uk_plant_parasite_genome • 0
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130
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Differences in annotations using Prokka on assembly done by SPAdes
annotation spades prokka written 5 weeks ago by jeetsahu • 0
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302
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Thousands of contigs in E.coli assembly
genome assembly contigs prokka written 3 months ago by vitorgomesbio • 0 • updated 3 months ago by Biostar ♦♦ 20
0
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1
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298
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1
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Prokka bacteria genome annotation
prokka written 4 months ago by agata88 • 760
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673
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5 follow
1
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Annotation with Prokka or RAST.
annotation prokka written 4 months ago by lokraj2003 • 30
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292
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1
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Are there any working GNU parallel or similar Shell code examples on how to run Pilon, Prokka, VT and Snpeff tools on a batch of input files?
shell parallel snpeff gnu prokka written 8 months ago by england_bioinformatics_team • 10 • updated 8 months ago by jrj.healey ♦ 9.1k
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Problem with Prokka to run tbl2asn
galaxy prokka written 9 months ago by vmevada102 • 20 • updated 9 months ago by aaron.petkau • 0
5
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2
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524
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2
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Annotation with Prokka - small ORFs and genus-specific DB?
annotation bacteria prokka written 10 months ago by predeus • 690 • updated 10 months ago by Asaf ♦ 5.0k
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334
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How to postprocess Velvet assembler output before subjecting to Prokka, BG7 or the RAST?
assembly bg7 prokka velvet rast written 13 months ago by bioinformatics_bel • 20
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2
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467
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Has anyone tried to run SNPEff, Bedtools or Prokka with GNU parallel or a similar batch engine?
bedtools parallel snpeff gnu prokka written 13 months ago by bioinformatics_bel • 20 • updated 13 months ago by WouterDeCoster ♦ 35k
1
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What software is a good standalone alternative to the Prokka genome annotation software?
software annotation prokka written 13 months ago by bioinformatics_bel • 20 • updated 13 months ago by h.mon ♦ 21k
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491
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How to fix Prokka`s annotation software error?
fasta annotation prokka software error written 13 months ago by bioinformatics_bel • 20 • updated 13 months ago by Matt Shirley ♦ 8.7k
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582
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PROKKA: File .err - why all my features have inconsistent gene
genome annotation prokka written 19 months ago by bzg • 20
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2
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2.1k
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2
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Installation issues with hmmer2
hmmer2 hmmsearch prokka hmmer written 4.2 years ago by JV • 380 • updated 2.1 years ago by RamRS ♦ 19k
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Annotate recombination regions
genome annotation recombination regions prokka written 2.5 years ago by natasha • 100
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4
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Prokka not running on Biolinux8
genome annotation prokka written 4.1 years ago by dago • 2.5k
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