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Best/right way to quantify small RNA transcripts

multi-mapping rpm small rna-seq written 7 months ago by Chirag Nepal • 2.1k

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Difference between CPM and RPM for RNA-seq reada quantification

rpm mirnas rna-seq cpm written 12 months ago by v82masae • 60 • updated 12 months ago by mforde84 • 1.2k

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Recent Replies

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These are probably mitochondrial homologs. They map to both the mitochondrial genome as well as o...
C: converting ensemble gene id/gene id version to hgnc symbol using Biomat r packeg by sahar850 • 0
Tnx for the tip, i will add the parameters names (it's actually the first time i'm using R) To th...
C: converting ensemble gene id/gene id version to hgnc symbol using Biomat r packeg by RamRS ♦ 17k
First off, I'd recommend using parameter names when you call functions, so commands are explicit....
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Thx you all at the end first i modified and then used lieven.sterck command grep 'cluste...
C: Efficient way to convert several lists into a present/absent binary format? by Kevin Blighe ♦ 28k
I see. What is the rule for converting these to 1 or 0?
C: Efficient way to convert several lists into a present/absent binary format? by stellaparker • 10
Not quite as in the example that you have posted above, like this: ![enter image description here...
C: Properly paired sequences ? by pinninti1991reddy • 30
Does this setting differ between the genome aligners ? Can i trust the samtools flag-stat statis...
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It's a species that has a reference genome but that is not well annotated in terms of gene expres...
C: Efficient way to convert several lists into a present/absent binary format? by Kevin Blighe ♦ 28k
So, its a data-frame (?)
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OR of 1 indicates neither an increased nor decreased odds of having the phenotype of interest. As...
C: gene expression analysis using RNA seq data by Kevin Blighe ♦ 28k
I see, I think that I know which data that is, in that case. It must be FPKM-UQ. In realising tha...
C: Efficient way to convert several lists into a present/absent binary format? by stellaparker • 10
I'm currently in a format where I have the "list name" as my column header, followed by the genes...

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