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-bash: ./HeatMap.R: cannot execute binary file. Why is this?

rnaseq rpm heatmapscript mapping written 25 days ago by jaqx008 • 40

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485

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Best/right way to quantify small RNA transcripts

multi-mapping rpm small rna-seq written 8 months ago by Chirag Nepal • 2.1k

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2.5k

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Difference between CPM and RPM for RNA-seq reada quantification

rpm mirnas rna-seq cpm written 14 months ago by v82masae • 60 • updated 14 months ago by mforde84 • 1.2k

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Recent Replies

A: How to calculate nucleotide diversity and Tajima for synonymous and non-synonymo by naung.m • 10
I'm having the same issue. Did you figure it out ?
C: heat map clustering by Kevin Blighe ♦ 32k
Your genes are already clustered, as indicated by the dendrogram, at left. However, there does no...
A: Paired-end flag for singleton by prasundutta87 • 260
I believe when a read is singleton, it is 'unpaired' for a paired-end sequencing read. So, you ca...
C: Similarity Matrix for Multiple sequence alignment by jrj.healey ♦ 8.6k
I still dont understand why you need to make this distinction? Any alignment you would do implici...
C: fastPHASE output format to PLINK input format by Kevin Blighe ♦ 32k
Take a look at previous answers / comments, here: - https://www.biostars.org/p/66807/ - https:...
C: Convert Phase Output To Plink by Kevin Blighe ♦ 32k
Take a look at previous answers / comments, here: - https://www.biostars.org/p/66807/ - https:...
A: EnhancedVolcano questions on parameters, arguments can set by Kevin Blighe ♦ 32k
I wrote *EnhancedVolcano* - thanks for your comments. You mentioned section 4.8: 4.8 Only label ...
C: Too many contig after genome assembly with Spades by jrj.healey ♦ 8.6k
I was more thinking of consecutive repeats (e.g. GCGCGCGCGCG), rather than IS etc, which would fa...
C: Too many contig after genome assembly with Spades by lieven.sterck • 3.1k
so that will give you roughly 25x , on the low side but doable I think
C: Too many contig after genome assembly with Spades by ahmad mousavi • 280
Sorry, I have no idea, we estimate genome size is ~7Mb, just estimation. We tried to have 100x co...
C: Too many contig after genome assembly with Spades by lieven.sterck • 3.1k
Would it be possible to provide some more info on your project? eg. estimate genome size (what is...
C: Too many contig after genome assembly with Spades by lieven.sterck • 3.1k
we all agree with Wouter :), but would a high GC not indicate less repetitive? TE (transpsoson?) ...

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