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<prev • 138 results • page 1 of 5 • next >
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How represent isoforms in different tracks in a genome browser?
reads alignment salmon rna-seq isoform written 28 days ago by Bardt9 • 0 • updated 7 days ago by Biostar ♦♦ 20
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Makes sense to conduct SALMON mapping followed by NOIseq for differential expression analysis?
noiseq salmon rna-seq written 10 days ago by YEODYNASTY • 0
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104
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running salmon on bam files
salmon star collate written 19 days ago by inah • 0 • updated 19 days ago by genomax ♦ 91k
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Using Salmon to Quantify shRNA Library
shrna salmon written 20 days ago by DeadlyFall • 0
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112
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CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to build?)
mouse cast salmon transcriptome written 28 days ago by Rhodnius • 0 • updated 28 days ago by mark.ziemann • 1.3k
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175
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GTF based salmon index file for GRCh38
salmon rna-seq index written 4 weeks ago by parvathi.sudha • 10
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174
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7 follow
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Building Salmon Index
salmon rna-seq index written 4 weeks ago by SeroroO • 20 • updated 4 weeks ago by ATpoint ♦ 40k
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156
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Gibbs sampling/bootstrap replicates in Salmon
salmon uncertainty written 4 weeks ago by Dunois • 150 • updated 4 weeks ago by Rob ♦ 4.5k
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194
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Transcripts with no read support
assembly alignment salmon rna-seq written 6 weeks ago by Dunois • 150
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8 follow
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How does salmon deal with decoy?
salmon rna rna-seq written 9 weeks ago by Cindy • 10 • updated 9 weeks ago by Rob ♦ 4.5k
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164
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Trouble with choosing the right reference transcriptome file for mm10
genome salmon kallisto rna-seq sequencing written 11 weeks ago by wyoo083 • 0
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230
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Salmon with Sleuth
sleuth salmon rna-seq written 12 weeks ago by koaeb • 10 • updated 12 weeks ago by dsull • 1.6k
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155
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Import Salmon output by tximport
tximport R salmon rna-seq written 12 weeks ago by koaeb • 10 • updated 12 weeks ago by RamRS ♦ 30k
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Salmon number of burn-in fragments warning
salmon mapping rna-seq written 12 weeks ago by bioinfo_cat • 0 • updated 12 weeks ago by h.mon ♦ 31k
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Dependencies auto-installed with Conda?
salmon conda nesoni written 3.8 years ago by Liflock • 0 • updated 3 months ago by Biostar ♦♦ 20
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Tximport error with Salmon data
R salmon rna-seq written 3 months ago by lilyolmstead • 0 • updated 3 months ago by RamRS ♦ 30k
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299
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Salmon auxiliary output
salmon written 12 months ago by g.wang2 • 10 • updated 3 months ago by mcsimenc • 10
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Error with snakemake
python pipeline snakemake salmon written 2.4 years ago by Biologist • 190 • updated 3 months ago by Biostar ♦♦ 20
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Event- vs transcript-based approaches for analyzing alternative splicing
rmats salmon rna-seq alternative splicing written 3 months ago by fmerkal • 30
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Salmon quant in Galaxy vs Command Line
salmon rna-seq written 4 months ago by NewtoBioinfo • 0 • updated 4 months ago by genomax ♦ 91k
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301
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7 follow
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Transcript level counts from full length scRNA data
scrna salmon star rna-seq written 4 months ago by geek_y ♦ 11k
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5 follow
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Having trouble running Salmon in Anaconda prompt
software error anaconda salmon python written 5 months ago by zal4002 • 0 • updated 4 months ago by zx8754 ♦ 9.7k
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168
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Tximport Error ... unable to match up my quant.sf and tx2gene columns
tximport salmon rna-seq written 4 months ago by 2405592M • 90
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Compare expression level of isoforms among conditions - TPM or deseq2 normalised counts?
tximport deseq2 salmon rna-seq written 4 months ago by tianshenbio • 50
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496
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5 follow
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DEseq2 results differs greatly when comparing output from STAR/featureCounts and Salmon
deseq2 salmon star rna-seq written 5 months ago by testtube • 0 • updated 5 months ago by Rob ♦ 4.5k
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Salmon validating best settings for use case
salmon rna-seq validation written 5 months ago by yryan • 0
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216
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salmon TPM output to linear regression in R
salmon rna-seq lm written 5 months ago by evelyn • 110
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208
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salmon shell script to automate quant
shellscript salmon written 5 months ago by amitpande74 • 0 • updated 5 months ago by ATpoint ♦ 40k
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12 follow
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Mapping vs Quasi-Mapping
salmon quasi-mapping written 2.2 years ago by pablo • 140 • updated 5 months ago by biochemistry-tehran • 0
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Can you use salmon bootstraps to increase sample size for machine learning
salmon machine learning rna-seq written 5 months ago by yryan • 0 • updated 5 months ago by ATpoint ♦ 40k
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