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<prev • 127 results • page 1 of 5 • next >
2
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1
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85
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1
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Salmon with Sleuth
sleuth salmon rna-seq written 5 days ago by koaeb • 10 • updated 5 days ago by dsull • 1.4k
1
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0
answers
79
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0
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Import Salmon output by tximport
tximport R salmon rna-seq written 5 days ago by koaeb • 10 • updated 5 days ago by RamRS ♦ 28k
0
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0
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45
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0
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Salmon number of burn-in fragments warning
salmon mapping rna-seq written 8 days ago by bioinfo_cat • 0 • updated 8 days ago by h.mon ♦ 30k
3
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1
answer
1.0k
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1
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Dependencies auto-installed with Conda?
salmon conda nesoni written 3.6 years ago by Liflock • 0 • updated 12 days ago by Biostar ♦♦ 20
1
vote
1
answer
86
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1
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Tximport error with Salmon data
R salmon rna-seq written 16 days ago by lilyolmstead • 0 • updated 16 days ago by RamRS ♦ 28k
3
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1
answer
275
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1
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Salmon auxiliary output
salmon written 9 months ago by g.wang2 • 10 • updated 21 days ago by mcsimenc • 10
0
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1
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2.0k
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1
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Error with snakemake
python pipeline snakemake salmon written 2.1 years ago by Biologist • 190 • updated 24 days ago by Biostar ♦♦ 20
0
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0
answers
77
views
0
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Event- vs transcript-based approaches for analyzing alternative splicing
rmats salmon rna-seq alternative splicing written 27 days ago by fmerkal • 20
0
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0
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96
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0
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Salmon quant in Galaxy vs Command Line
salmon rna-seq written 6 weeks ago by NewtoBioinfo • 0 • updated 6 weeks ago by genomax ♦ 87k
8
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1
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213
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7 follow
1
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Transcript level counts from full length scRNA data
scrna salmon star rna-seq written 6 weeks ago by geek_y ♦ 11k
3
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0
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213
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5 follow
0
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Having trouble running Salmon in Anaconda prompt
software error anaconda salmon python written 3 months ago by zal4002 • 0 • updated 7 weeks ago by zx8754 ♦ 9.4k
3
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1
answer
118
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1
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Tximport Error ... unable to match up my quant.sf and tx2gene columns
tximport salmon rna-seq written 8 weeks ago by 2405592M • 90
0
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0
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148
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0
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Compare expression level of isoforms among conditions - TPM or deseq2 normalised counts?
tximport deseq2 salmon rna-seq written 8 weeks ago by tianshenbio • 50
5
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2
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368
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5 follow
2
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DEseq2 results differs greatly when comparing output from STAR/featureCounts and Salmon
deseq2 salmon star rna-seq written 10 weeks ago by testtube • 0 • updated 10 weeks ago by Rob ♦ 4.0k
0
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0
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104
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Salmon validating best settings for use case
salmon rna-seq validation written 3 months ago by yryan • 0
0
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0
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169
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0
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salmon TPM output to linear regression in R
salmon rna-seq lm written 3 months ago by evelyn • 100
1
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1
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132
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1
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salmon shell script to automate quant
shellscript salmon written 3 months ago by amitpande74 • 0 • updated 3 months ago by ATpoint ♦ 36k
24
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1
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3.1k
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11 follow
1
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Mapping vs Quasi-Mapping
salmon quasi-mapping written 2.0 years ago by vincentpailler • 140 • updated 3 months ago by biochemistry-tehran • 0
1
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1
answer
127
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1
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Can you use salmon bootstraps to increase sample size for machine learning
salmon machine learning rna-seq written 3 months ago by yryan • 0 • updated 3 months ago by ATpoint ♦ 36k
8
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2
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441
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2
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Salmon: Any downstream DEA tools which uses abundance estimate variation information?
deseq2 salmon written 18 months ago by Thomas • 90 • updated 3 months ago by ATpoint ♦ 36k
0
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0
answers
285
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0
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Help with Salmon --> tximport --> edgeR
tximport salmon rna-seq edger normalisation written 3 months ago by u3005992 • 0
3
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1
answer
265
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1
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Salmon only processes human reads from PDX data
software error alignment salmon rna-seq written 6 months ago by jrleary • 130 • updated 3 months ago by sandeep.amberkar18 • 50
2
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2
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1.2k
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2
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featureCounts with pseudobam
featurecounts salmon rna-seq pseudobam kallisto written 3.6 years ago by mccormack • 40 • updated 4 months ago by ATpoint ♦ 36k
1
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0
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229
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0
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What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
htseq salmon star filtering counts written 4 months ago by Gabriel • 60
6
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1
answer
180
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1
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From transcript to gene - Salmon quantification
salmon written 4 months ago by JulianC • 10 • updated 4 months ago by ATpoint ♦ 36k
1
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0
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146
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0
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quantify tRNA-derived fragments on RNA-seq data
trna-derived fragments salmon rna-seq written 4 months ago by lkianmehr • 50
5
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1
answer
248
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1
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Salmon annotation of transcripts in quasi-mapping step
salmon mapping pseudoalignment written 5 months ago by Iara Souza • 0
5
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1
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163
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1
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can salmon distinguish similar transcript?
salmon rna-seq written 5 months ago by arezu.lari • 0 • updated 5 months ago by ATpoint ♦ 36k
2
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1
answer
155
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1
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MPI/multi-threading in salmon quasi-mapping
salmon rna-seq written 5 months ago by vaushev • 10 • updated 5 months ago by Devon Ryan ♦ 96k
1
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1
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188
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1
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warning when creating salmon index from GENCODE transcriptome
salmon rna-seq written 5 months ago by vaushev • 10 • updated 5 months ago by Rob ♦ 4.0k
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